CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48208	Soybean	nucleus	88.47	90.0
KRH54980	Soybean	nucleus	16.5	76.4
VIT_05s0049g02360.t01	Wine grape	nucleus	64.32	67.26
PGSC0003DMT400003801	Potato	nucleus	62.99	65.12
Solyc09g090740.2.1	Tomato	nucleus	62.62	64.58
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	47.57	62.32
GSMUA_Achr5P10150_001	Banana	nucleus	53.03	56.75
CDY52719	Canola	nucleus, plastid	55.1	54.76
CDY34979	Canola	nucleus, plastid	55.22	54.69
AT3G16840.2	Thale cress	nucleus	53.52	53.33
OQU81941	Sorghum	nucleus	52.43	51.31
Os04t0510400-01	Rice	nucleus	50.97	50.48
Zm00001d003031_P002	Maize	nucleus	51.46	50.12
TraesCS2B01G384300.1	Wheat	nucleus	50.73	50.06
TraesCS2D01G363700.1	Wheat	nucleus	50.61	49.88
TraesCS2A01G366700.1	Wheat	nucleus	50.73	49.53
HORVU2Hr1G088480.2	Barley	nucleus, plastid	51.09	48.5
KRH65120	Soybean	cytosol	17.72	33.26
KRH37970	Soybean	cytosol	10.8	27.81
KRH48210	Soybean	nucleus	10.8	27.81
KRH43700	Soybean	cytosol	18.69	26.28
KRH13749	Soybean	cytosol, plastid	18.57	25.89
KRG97683	Soybean	nucleus	17.23	24.11
KRH56711	Soybean	nucleus	16.26	23.43
KRH03838	Soybean	nucleus	15.9	22.78
KRH62970	Soybean	nucleus	14.81	22.51
KRH54795	Soybean	nucleus	14.56	21.94
KRH12590	Soybean	nucleus	14.2	21.55
KRH31184	Soybean	nucleus	17.35	21.5
KRH46113	Soybean	nucleus	19.17	20.87
KRH37539	Soybean	nucleus	13.59	20.78
KRG98832	Soybean	nucleus	18.93	20.55
KRH37947	Soybean	plastid	14.68	20.54
KRH47920	Soybean	nucleus	16.5	19.35
KRH73730	Soybean	nucleus	17.23	19.03
KRH64859	Soybean	nucleus	17.35	18.4
KRH09570	Soybean	nucleus	17.23	18.28
KRH41139	Soybean	nucleus	15.66	18.25
KRH06491	Soybean	nucleus	16.75	17.12
KRH59841	Soybean	nucleus	10.19	15.88
KRH14417	Soybean	cytosol, nucleus	9.95	15.53

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001314	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_03G014700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K7KC66	EnsemblPlants:KRH65117	ProteinID:KRH65117	ProteinID:KRH65117.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002954BA1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:1478456..1486312

Molecular Weight (calculated)

92436.4 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.604

Length

824 amino acids

Sequence
(BLAST)

001: MQSLCSAKTN KYTYEKTLNA TVPATTANSS QRKPKRKRAS ARSDPELDRL DALPWNSALP PQNDDDDDAF SLFIGSNELE GGFLSLEEVD EAEYGLSIPE
101: PEVNKRKTKK KKSEQNENLK KQQQDGIDGA CSNAVVEAEL DESVKSKEKK KKKNKTTNKK KDATVDQTVE QSDAGLDTNV KDDGGEEDVD ETECYAWNEL
201: RLHPLLMKAI CKLGFKEPTP IQKACIPAAA HQGKDVVGAA ETGSGKTLAF GLPILQRLLE EREKAANMDE ERGEEPEKYA PTGFLRALII APTRELALQV
301: TDHLKAVAKH INVRVIPIVG GILAEKQERL LIAKPDIVVG TPGRLWELMS AGEKHLVELH SLSFFVLDEA DRMVQNGHFK ELQSIIDMLP MSINSTEDNS
401: QHKRQTLVFS ATVALSSDFR KKLKRGSIQQ KQSLTDGLNS IETLSERAGM RPNAAIIDLT NPSILAAKLE ESFIECREED KDAYLYYILT VHGQGRTIVF
501: CTSIAALRHI SSISWLYCPS MSIVCVYFVS PFMGHGTQIL EIAMDRFREN ENGILVATDV AARGLDIPGV RTVVHYQLPH SAEVYVHRSG RTARASAEGC
601: SIALISSRDT SKFASLCKSF SNDNFQRFPL ENSYVPEVLK RLSLARQIDK ITRKESQEKA EKNWFDRNAS SVELVTENYD SEEEQVNKHK QMKISSRQLK
701: KLQEELKMLI SRPLQSKTFS HRYLVGAGVT PLMQEQLQQL ARQKLSDHQG SGLGKKGKLV VIGQDCVDAL QALRSAGEEV RMDVKDLAGK QRNMQNLKRK
801: RKEEKKRLRD QRRKQKKKLK YGNE

Best Arabidopsis Sequence Match ( AT3G16840.1 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.