Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0049g02360.t01 | Wine grape | nucleus | 61.95 | 60.53 |
| Bra021205.1-P | Field mustard | mitochondrion, nucleus, plastid | 46.75 | 57.23 |
| PGSC0003DMT400003801 | Potato | nucleus | 58.96 | 56.96 |
| Solyc09g090740.2.1 | Tomato | nucleus | 58.96 | 56.82 |
| KRH48208 | Soybean | nucleus | 59.61 | 56.67 |
| OQU81941 | Sorghum | nucleus | 60.39 | 55.23 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 59.61 | 54.97 |
| Os04t0510400-01 | Rice | nucleus | 59.22 | 54.81 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 59.48 | 54.78 |
| Zm00001d003031_P002 | Maize | nucleus | 60.0 | 54.61 |
| TraesCS2A01G366700.1 | Wheat | nucleus | 59.61 | 54.38 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 59.87 | 53.11 |
| KRH65117 | Soybean | plastid | 56.75 | 53.03 |
| CDY34979 | Canola | nucleus, plastid | 52.34 | 48.44 |
| CDY52719 | Canola | nucleus, plastid | 51.95 | 48.25 |
| AT3G16840.2 | Thale cress | nucleus | 51.3 | 47.76 |
| GSMUA_Achr5P09910_001 | Banana | nucleus | 14.55 | 23.63 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 13.64 | 23.49 |
| GSMUA_Achr10P... | Banana | cytosol | 14.94 | 22.24 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 20.78 | 20.89 |
| GSMUA_Achr7P18160_001 | Banana | nucleus | 15.58 | 20.55 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 14.55 | 20.07 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 16.49 | 19.51 |
| GSMUA_Achr8P34380_001 | Banana | cytosol | 17.53 | 18.57 |
| GSMUA_Achr8P04210_001 | Banana | cytosol | 16.75 | 17.43 |
| GSMUA_Achr6P00390_001 | Banana | cytosol, mitochondrion | 16.36 | 17.17 |
| GSMUA_Achr9P14580_001 | Banana | nucleus | 17.92 | 16.81 |
| GSMUA_Achr10P... | Banana | mitochondrion | 16.36 | 16.64 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSMUA_Achr5G10150_001 | EnsemblPlants:GSMUA_Achr5P10150_001 | EnsemblPlants:GSMUA_Achr5T10150_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M0SX94 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF91 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000295ACE8 |
| SEG:seg | : | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_49.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G10150_001]
Coordinates
chr5:-:7227785..7244197
Molecular Weight (calculated)
86129.1 Da
IEP (calculated)
9.834
GRAVY (calculated)
-0.637
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKPSSPLPG NTIKKQRKDK KKAKPPRRGE GPESDQLDSL PWNGSLAADD SFLLLGESSE GGFLSLEEID ESEYGFIGGI PDLEAGNKKK KKKLYSDLKS
101: KKRKRGEENG GSDGSCVVDA DEGEEEAKNK TKKKKKSRRK KRKGVSDESG EPKGESTVEG RDKNKHHNNF VGDDGNENLI LDEDEVYAWK ELRLHPLLVK
201: SIRQLGFKEP TPIQKACIPA AAHQGKDVIG AAETGSGKTL AFALPILQRL LEEREKEGRL IHENRNSDEK VFSGGPLRAL IITPTRELAL QVSDHLKGGA
301: KFLDIQVVPI VGGMSTEKQE RLLKRRPEIV VGTPGRLWEL MSAGEQHLVE LHSLSFFVLD EADRMIESGH FHELQSIIDI GLSSSRPSVS DGLSSIETLS
401: ERAGIRPDVA IVDLTNAAIL AHKLEESFLE CEEEVKEAYL YYILSVHGQG RTIIFCTSIA AVRRISSILR ILGINALTLH AQMQQRARLK AIDRFRGNEH
501: SVLIATDVAA RGLDIPGIRT VVHFQLPHSA EVYIHRSGRT ARASADGCCI ALISPSDKTK FFALCKSLSK ESLRQFPVDD SYMPEILKRL SLARQIDKIL
601: RKNSQENVNK SWLMRNAESL GLEVVESASE EDVVNGYKQK KISSLQLKKL QQELNDHLKQ PFQPKTFSRR FLAGAGVSPL VQQQLEQLSK MNTVDANNSS
701: KRAGFVVIGQ DFVEPLQALR SSGHEVCVNV DKKRETRRQA ETWKRKKRDE KRRQREKQRK DRKKAREGIN
101: KKRKRGEENG GSDGSCVVDA DEGEEEAKNK TKKKKKSRRK KRKGVSDESG EPKGESTVEG RDKNKHHNNF VGDDGNENLI LDEDEVYAWK ELRLHPLLVK
201: SIRQLGFKEP TPIQKACIPA AAHQGKDVIG AAETGSGKTL AFALPILQRL LEEREKEGRL IHENRNSDEK VFSGGPLRAL IITPTRELAL QVSDHLKGGA
301: KFLDIQVVPI VGGMSTEKQE RLLKRRPEIV VGTPGRLWEL MSAGEQHLVE LHSLSFFVLD EADRMIESGH FHELQSIIDI GLSSSRPSVS DGLSSIETLS
401: ERAGIRPDVA IVDLTNAAIL AHKLEESFLE CEEEVKEAYL YYILSVHGQG RTIIFCTSIA AVRRISSILR ILGINALTLH AQMQQRARLK AIDRFRGNEH
501: SVLIATDVAA RGLDIPGIRT VVHFQLPHSA EVYIHRSGRT ARASADGCCI ALISPSDKTK FFALCKSLSK ESLRQFPVDD SYMPEILKRL SLARQIDKIL
601: RKNSQENVNK SWLMRNAESL GLEVVESASE EDVVNGYKQK KISSLQLKKL QQELNDHLKQ PFQPKTFSRR FLAGAGVSPL VQQQLEQLSK MNTVDANNSS
701: KRAGFVVIGQ DFVEPLQALR SSGHEVCVNV DKKRETRRQA ETWKRKKRDE KRRQREKQRK DRKKAREGIN
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.