Factsheet for TraesCS2B01G384300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G363700.1	Wheat	nucleus	98.8	98.68
TraesCS2A01G366700.1	Wheat	nucleus	98.2	97.16
HORVU2Hr1G088480.2	Barley	nucleus, plastid	96.53	92.86
Os04t0510400-01	Rice	nucleus	79.88	80.17
OQU81941	Sorghum	nucleus	77.72	77.08
Zm00001d003031_P002	Maize	nucleus	77.25	76.24
VIT_05s0049g02360.t01	Wine grape	nucleus	57.13	60.53
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	45.27	60.1
GSMUA_Achr5P10150_001	Banana	nucleus	54.97	59.61
PGSC0003DMT400003801	Potato	nucleus	55.33	57.97
Solyc09g090740.2.1	Tomato	nucleus	55.33	57.82
KRH48208	Soybean	nucleus	54.13	55.8
CDY52719	Canola	nucleus, plastid	50.9	51.27
CDY34979	Canola	nucleus, plastid	51.02	51.2
KRH65117	Soybean	plastid	50.06	50.73
AT3G16840.2	Thale cress	nucleus	49.46	49.94
TraesCS2B01G179900.1	Wheat	cytosol	17.6	28.77
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	16.05	27.92
TraesCS2B01G150800.1	Wheat	mitochondrion	15.93	25.78
TraesCS3B01G252700.2	Wheat	nucleus	13.89	24.32
TraesCS3B01G252600.1	Wheat	plastid	15.93	22.73
TraesCS1B01G037600.1	Wheat	nucleus	16.65	22.56
TraesCS3B01G116900.1	Wheat	plastid	16.65	21.62
TraesCS6B01G342900.1	Wheat	nucleus	14.13	21.61
TraesCS5B01G378100.1	Wheat	nucleus	20.12	21.57
TraesCS5B01G120400.1	Wheat	nucleus	14.73	21.21
TraesCS2B01G247500.1	Wheat	nucleus	16.17	17.69
TraesCS6B01G455000.1	Wheat	cytosol	17.25	17.08
TraesCS7B01G213800.1	Wheat	nucleus	6.23	16.83
TraesCS4B01G341100.1	Wheat	plastid	16.65	16.28
TraesCS7B01G232200.1	Wheat	mitochondrion	18.44	15.89

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G384300	EnsemblPlants:TraesCS2B01G384300.1
TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:548291703..548297368

Molecular Weight (calculated)

92994.8 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.743

Length

835 amino acids

Sequence
(BLAST)

001: MADAPEQPTP DPPTPPQEAI QRPKKNKKGR RKKPKKVAAA TAAPSSSGAT MVEDPFLVLA GGKEGGFLEL EEIDGADFGI FGSVVEDVGA SEKKAWNDQK
101: KKKKKKRKRG DAKRLDGNVG GDGDGDGDCA GDSVAESEEG EKGEKKGKRK KRNKKKRKVK DNDSESKEDV ADDNVEDMQD DIANMEQDNK EEVKLGEDEL
201: YAWLELRLHP LLIKAMHRLG FNEPTPIQKA CIPAGAHQGK DVIGAAETGS GKTLAFGLPI LQRLLEEREK TTRLHVEDEK AAEGSSTGGP LRALILTPTR
301: ELAKQVCDHL KEAAKFLGIH VVPIVGGLSM EKQERLLKKK PEIVVGTPGR LWELMSSGNQ HLVELHSLSF FVLDEADRMI ERGHFKEVQS IIEMLPLSNS
401: SDEQTVKATS SCETVANLQI KKRQTFVFSA TLALSANFRK KLKRGLSTSK TATADDLSSI EALSKQAGMK PNAEIVDLTN ASILPEKLEE SFIECSDDDK
501: DANLYYILSV HGQGRTIVFC TSISALRHIS SLLRTLGINV LTNHAQMQQR ARMKAVDRFR EGENSVLVAT DGFARGMDFD NVRTVIHYQL PHSSDVYIHR
601: SGRTARKSLT GCSIALISPA DKAKFYSLCK SFSKENLQQF PVDQAYMPAI MNRLSLARQI DKISSKNSKE NANKSWLQRN AESMGLILEA SDSEEERVRG
701: HKQRKATSAQ LQKLQQDLNE LLQHPLQPKT FSRRYLAGAG ISPLLQKQLE ELSKRNVNSN SSNDNNKGSR FVIIGQDRVE PLQALQDSGQ EICVNMDKQK
801: EKRRLAENWR RKKHEEKKST REQKRKDRRS AKERD

Best Arabidopsis Sequence Match ( AT3G16840.2 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.