CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34979	Canola	nucleus, plastid	97.35	97.0
AT3G16840.2	Thale cress	nucleus	76.84	77.03
VIT_05s0049g02360.t01	Wine grape	nucleus	57.9	60.91
PGSC0003DMT400003801	Potato	nucleus	58.5	60.85
Solyc09g090740.2.1	Tomato	nucleus	58.26	60.45
KRH48208	Soybean	nucleus	57.54	58.89
KRH65117	Soybean	plastid	54.76	55.1
GSMUA_Achr5P10150_001	Banana	nucleus	48.25	51.95
OQU81941	Sorghum	nucleus	52.23	51.43
TraesCS2D01G363700.1	Wheat	nucleus	51.39	50.96
TraesCS2B01G384300.1	Wheat	nucleus	51.27	50.9
Os04t0510400-01	Rice	nucleus	50.9	50.72
TraesCS2A01G366700.1	Wheat	nucleus	51.15	50.24
Zm00001d003031_P002	Maize	nucleus	51.27	50.24
HORVU2Hr1G088480.2	Barley	nucleus, plastid	51.51	49.19
CDY47007	Canola	cytosol	16.65	30.73
CDY42845	Canola	cytosol	16.65	30.73
CDY52844	Canola	cytosol	17.61	29.98
CDX81759	Canola	cytosol	17.61	29.92
CDY40740	Canola	cytosol	15.56	23.84
CDY18530	Canola	nucleus	16.04	23.42
CDX95512	Canola	nucleus	15.92	23.16
CDY36514	Canola	nucleus	16.28	23.16
CDY08740	Canola	nucleus	16.53	23.06
CDY44780	Canola	mitochondrion	15.8	22.66
CDX82336	Canola	nucleus	15.56	22.51
CDX75974	Canola	nucleus	15.8	22.51
CDY14112	Canola	cytosol	16.04	22.39
CDX99342	Canola	nucleus	15.32	22.36
CDX92251	Canola	nucleus	15.32	22.32
CDX70149	Canola	nucleus	16.04	22.24
CDY04952	Canola	nucleus	15.92	22.22
CDY40519	Canola	nucleus	19.42	21.24
CDX96202	Canola	cytosol	6.76	20.14
CDX84428	Canola	mitochondrion	17.01	19.94
CDY41525	Canola	mitochondrion	17.01	19.83
CDY17287	Canola	nucleus	15.44	19.57
CDY50846	Canola	nucleus	19.54	19.31
CDY53643	Canola	nucleus	19.42	19.08
CDX79974	Canola	nucleus	15.8	19.04
CDY23886	Canola	plasma membrane	16.04	18.97
CDY49890	Canola	mitochondrion	17.13	18.21
CDY45370	Canola	mitochondrion	17.13	18.16
CDX69933	Canola	cytosol	2.77	16.91
CDX79187	Canola	cytosol	17.25	16.86
CDX68066	Canola	cytosol	17.25	16.78
CDY32273	Canola	nucleus	18.34	16.65
CDY21554	Canola	mitochondrion	17.49	10.67
CDX69935	Canola	mitochondrion	17.61	10.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078ITG6	UniProt:A0A078ITG6	EnsemblPlants:CDY52719	ProteinID:CDY52719
ProteinID:CDY52719.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00007656001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EF4658	SEG:seg

Description

BnaC01g44040DBnaC01g44040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITG6]

Coordinates

chrLK033122:-:12210..16806

Molecular Weight (calculated)

92886.1 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.642

Length

829 amino acids

Sequence
(BLAST)

001: MSKLLKSTAS MSPGGGESSS MAAKKKNKRS HKRKREEELE RLDSLPWSST IPIGEDDEGE TFSTLFAGSD ELDGGFLSLE EIDEADYNLA DFPVDESVKG
101: KKGLAHENND SDEEEAVDEI TEDKAGEEEE SKGEGDLESP KKKEKKYKNK KKKERKKRVK EAVEVQESPD AVSCDEENKA EELDGEEEEI PPEFSAWSLM
201: RLHPLLMKSI YHLGFKEPTK IQKACFTVAA FQGKDVIGAA ETGSGKTLAF GLPILQRLLD EREKVGKLYA LKGEEAQKYS ADGYLRALII TPTRELALQV
301: TEHLKNAAKN LGVRVVPIVG GMSSAKQERL LKGKPEIVVG TPGRLWELMS VGEKHLVELQ CLSFFVLDEA DRMVEGGHFR ELQSIIDMLP VTDKPSEGKT
401: QSSDTVSDAP KKKRQTFVFS ATIALSSDFR KKLKRGSSKS KQSSSGEVNS IEVLSERAGM RDSVAIVDLT TAAILAPKIE ESFIRCEEED KDAYLYYLLS
501: VHGQGRTIVF CTSVAALRHI CALLKILGVD VCKLNADMKQ QARLKAMDRF RSSENGVLVA TDVVARGIDI KNVRTIIHYQ LPHSAEVYVH RSGRTARAFA
601: DGCSIALIAP NDTSKFYTLC KSFSKESVKI FPLDSSLMPD VRKRLSLARQ IDQIERKGSR ERVDRTWLEK HAELMELELD EDESEEEKVD NVRQRKVTSA
701: QLKKLKEELS SLLSRPMQPK KFSDRYFAGC GMSPLLQNQL AELTNQKQQQ QVATGGDKKR RKLVVVSQNC IEPLQALRDG SKEVMSMKGQ SADKRRDIAT
801: LRKKRKEEKI GRRDQRRDQK KKRKLMASS

Best Arabidopsis Sequence Match ( AT3G16840.2 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.