CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038492.1-P	Field mustard	nucleus	95.4	95.93
CDY40519	Canola	nucleus	74.26	89.45
CDY50846	Canola	nucleus	73.82	80.33
CDY53643	Canola	nucleus	73.82	79.86
AT4G16630.1	Thale cress	nucleus	68.89	79.72
KRH37947	Soybean	plastid	41.62	64.52
VIT_18s0001g14540.t01	Wine grape	nucleus	51.37	64.07
KRH46113	Soybean	nucleus	52.35	63.14
Solyc04g081580.2.1	Tomato	nucleus	51.26	62.9
KRG98832	Soybean	nucleus	52.25	62.85
PGSC0003DMT400025551	Potato	nucleus	51.15	62.68
GSMUA_Achr8P12970_001	Banana	nucleus	47.54	56.66
KRH37970	Soybean	cytosol	19.82	56.56
Zm00001d021127_P001	Maize	nucleus, plasma membrane	46.88	55.58
TraesCS5D01G385400.1	Wheat	nucleus	47.32	55.53
TraesCS5B01G378100.1	Wheat	nucleus	47.21	55.33
TraesCS5A01G375900.1	Wheat	nucleus	47.1	55.27
KXG35997	Sorghum	nucleus	47.75	54.91
Zm00001d006113_P001	Maize	nucleus	47.21	54.63
Os12t0481100-01	Rice	nucleus	47.97	54.61
HORVU5Hr1G093160.3	Barley	nucleus	47.1	51.74
CDY52844	Canola	cytosol	15.77	29.57
CDX81759	Canola	cytosol	15.66	29.3
CDY42845	Canola	cytosol	14.13	28.73
CDY47007	Canola	cytosol	14.02	28.51
CDX70149	Canola	nucleus	14.57	22.24
CDY18530	Canola	nucleus	13.8	22.18
CDX82336	Canola	nucleus	13.91	22.16
CDX95512	Canola	nucleus	13.8	22.11
CDY14112	Canola	cytosol	14.35	22.05
CDY04952	Canola	nucleus	14.35	22.05
CDX99342	Canola	nucleus	13.69	22.01
CDX75974	Canola	nucleus	13.91	21.82
CDY40740	Canola	cytosol	12.92	21.81
CDX92251	Canola	nucleus	13.47	21.62
CDY36514	Canola	nucleus	13.8	21.61
CDX96202	Canola	cytosol	6.46	21.22
CDY08740	Canola	nucleus	13.8	21.21
CDX79974	Canola	nucleus	15.77	20.93
CDY23886	Canola	plasma membrane	15.88	20.68
CDY44780	Canola	mitochondrion	13.03	20.59
CDY17287	Canola	nucleus	14.02	19.57
CDX68066	Canola	cytosol	17.74	19.01
CDY41525	Canola	mitochondrion	14.79	18.99
CDX79187	Canola	cytosol	17.42	18.75
CDX84428	Canola	mitochondrion	14.35	18.53
CDY52719	Canola	nucleus, plastid	16.65	18.34
CDY34979	Canola	nucleus, plastid	16.43	18.03
CDX69933	Canola	cytosol	2.63	17.65
CDY49890	Canola	mitochondrion	13.36	15.64
CDY45370	Canola	mitochondrion	13.25	15.47
CDY21554	Canola	mitochondrion	15.12	10.15
CDX69935	Canola	mitochondrion	15.12	10.01

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078H640	UniProt:A0A078H640	EnsemblPlants:CDY32273	ProteinID:CDY32273
ProteinID:CDY32273.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00051727001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EEFBEC	SEG:seg

Description

BnaA01g17110DBnaA01g17110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H640]

Coordinates

chrLK032290:+:430092..436259

Molecular Weight (calculated)

103129.0 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.583

Length

913 amino acids

Sequence
(BLAST)

001: MSGAFFYDAD SDDELEFLNH ELNSSGEDKA EERKGQAEAV EDEDEKPRGG KRSTNAHSPW DFTSYSSSVG EEHARRHTTS IDEKISKAIK HRPLPISTEE
101: EDVSDAQHGK QEEEEYLWED EDTAELKAEA KPFFSTVDGV SFQADSFMKL NLPRPLIQAC KTLGYEKPTP IQAACIPLAM LGRDLCASAI TGSGKTAAFA
201: LPTLERLMYR PKRVSATRAL ILTPTRELAV QIHSMIQKLA QYTDIKCGLI VGGLSVREQE VVLRSMPDIV VATPGHRLLQ TGFATEIQEL VRLSPKRRQT
301: MLFSATMTDE VKELAKLSLN KPLRLSADPS ARRPPGLTEE VVRIRRTREA NQEAVLLSLC TRTFKSKVII FSGTKQAAHR LKILFGLAGL KAAELHGNLT
401: QAQRLDSLEH FRKQEVDFLI ATDVAARGLD IIGVQTVINY ACPREIDSYV HRVGRTARAG RKGYAVTFVT DNDRSLLKVI AKKVGSKLKS RIIPEQSIVK
501: WSQIIDEMED QYSAVIREER EERALRKAEM EFAKAENMIE HRDEIYARPK RTWFMTEKEK KLVAKAEKDS ARNPSGKELI SADIAEDLKM KEKRKLEREK
601: NLPRKKRRKL EAAREMLEDN EGEEDGEDQK RGRTRGMEKK KKQEPDKKGL TLVNLGYRRA KAVKAKQRAI DSGKMERPTP NKKQNLNRSK PRTTLPRNEE
701: MKDLFKSDMS EKKEGRGGAA AAAKPKGKSK NSFKSKGRLR LLLRPKRVFA TRVLILTPTR ELAVQIHSMI QKLAQYTDIK CGLIVGGLSV REQEVILRSM
801: PDIVVATPGR MIDHLHNSMS VSLDDLLVLI LDEADRLLQT GFATEIQELV RLCPKRRQTM LFSATMTEEV KELVRLSLNK PLRLSADPSA RRPPGLTEEY
901: VSFYFIISSH LNS

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.