Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28628250
|
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G385400.1 | Wheat | nucleus | 99.23 | 99.36 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 97.43 | 97.56 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 95.64 | 89.65 |
| Os12t0481100-01 | Rice | nucleus | 83.57 | 81.17 |
| KXG35997 | Sorghum | nucleus | 80.36 | 78.84 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 77.92 | 78.83 |
| Zm00001d006113_P001 | Maize | nucleus | 78.05 | 77.06 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 69.83 | 71.02 |
| KRH37970 | Soybean | cytosol | 27.98 | 68.12 |
| KRH37947 | Soybean | plastid | 51.48 | 68.08 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 63.8 | 67.9 |
| Solyc04g081580.2.1 | Tomato | nucleus | 63.54 | 66.53 |
| KRH46113 | Soybean | nucleus | 64.57 | 66.45 |
| PGSC0003DMT400025551 | Potato | nucleus | 63.41 | 66.31 |
| KRG98832 | Soybean | nucleus | 64.06 | 65.74 |
| AT4G16630.1 | Thale cress | nucleus | 60.33 | 59.57 |
| CDY40519 | Canola | nucleus | 57.25 | 58.84 |
| CDY50846 | Canola | nucleus | 59.95 | 55.66 |
| CDY53643 | Canola | nucleus | 60.08 | 55.45 |
| Bra040743.1-P | Field mustard | nucleus | 60.08 | 53.55 |
| Bra038492.1-P | Field mustard | nucleus | 55.33 | 47.47 |
| CDY32273 | Canola | nucleus | 55.33 | 47.21 |
| TraesCS6B01G142500.1 | Wheat | mitochondrion, nucleus | 19.0 | 30.83 |
| TraesCS2B01G179900.1 | Wheat | cytosol | 18.74 | 28.57 |
| TraesCS2B01G150800.1 | Wheat | mitochondrion | 18.87 | 28.49 |
| TraesCS3B01G252700.2 | Wheat | nucleus | 15.92 | 26.0 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 18.36 | 24.66 |
| TraesCS3B01G116900.1 | Wheat | plastid | 19.64 | 23.79 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 16.56 | 23.63 |
| TraesCS1B01G037600.1 | Wheat | nucleus | 18.49 | 23.38 |
| TraesCS3B01G252600.1 | Wheat | plastid | 16.56 | 22.05 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 21.57 | 20.12 |
| TraesCS4B01G341100.1 | Wheat | plastid | 21.05 | 19.2 |
| TraesCS2B01G247500.1 | Wheat | nucleus | 17.97 | 18.35 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 6.93 | 17.48 |
| TraesCS6B01G455000.1 | Wheat | cytosol | 18.49 | 17.08 |
| TraesCS7B01G232200.1 | Wheat | mitochondrion | 19.51 | 15.69 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5B01G378100 | EnsemblPlants:TraesCS5B01G378100.1 |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:-:556293523..556296037
Molecular Weight (calculated)
86959.7 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.709
Length
779 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDFRFDPD GSDDEAPAGA AARRKPAQSP WEFSTYAESV AAEHAARRTT SIDEKISQAL RGRRNPSMPD GSEDEEDDDA DDDSDEEAAV KGESGDDEDE
101: IEESDDDDEE IESSGGEEDG EVEADGQEEE EEEEEVGEEE EAVQEEDDAP EQPDPSQFFA SSEGASFSAR SFLELNLSRP LIRACEALGY QKPTPIQAAC
201: IPLALTGRDI CGSAITGSGK TAAFSLPVLE RLLFRPKRVP AIRVLILTPT RELAAQVHSM IEKLAQFTDI RCCLIVGGLP TKAQEVALRS NPDIVVATPG
301: RIVDHLRNSL SVGLEDLAVL ILDEADRLLE LGFSVEIGEL IRMCPKRRQT MLFSATMTEQ IDELVKLSLN KPVRLEADPS LKRPATLTEE VVRIRRSREA
401: TQEAVLLALC LKTFKERVII FSGTKHSAHR LKILFGLSGI KAAELHGNLT QAQRLEALEQ FKKQEADILI ATDIAARGID IVGVRTVINF ACPRDVKTYL
501: HRVGRTARAG REGYAVTFVT DDDRSLLKAI AKKAGSQLKS RIVAEKPVSD CAKLIEQLEH QISNIILEER EEMALRKAEM EATKAENMIA HRDEIYSRPK
601: RTWFATEKEK KLLAKAAKES LDQVKGGSVV VSAQQAEDLR LKEKRRRERE KNLPRKKRRK LEAQREMLEE EKEDEEEAQE SKGGKKAKSS QSVVDVAYRR
701: AKSMKATGKT GIRASKGKND KGSKQPSEKG QTRQEEMHEL FQNDMSEWKQ GRSLKKKDTS FAKKSKNSFK SKSRYKRRK
101: IEESDDDDEE IESSGGEEDG EVEADGQEEE EEEEEVGEEE EAVQEEDDAP EQPDPSQFFA SSEGASFSAR SFLELNLSRP LIRACEALGY QKPTPIQAAC
201: IPLALTGRDI CGSAITGSGK TAAFSLPVLE RLLFRPKRVP AIRVLILTPT RELAAQVHSM IEKLAQFTDI RCCLIVGGLP TKAQEVALRS NPDIVVATPG
301: RIVDHLRNSL SVGLEDLAVL ILDEADRLLE LGFSVEIGEL IRMCPKRRQT MLFSATMTEQ IDELVKLSLN KPVRLEADPS LKRPATLTEE VVRIRRSREA
401: TQEAVLLALC LKTFKERVII FSGTKHSAHR LKILFGLSGI KAAELHGNLT QAQRLEALEQ FKKQEADILI ATDIAARGID IVGVRTVINF ACPRDVKTYL
501: HRVGRTARAG REGYAVTFVT DDDRSLLKAI AKKAGSQLKS RIVAEKPVSD CAKLIEQLEH QISNIILEER EEMALRKAEM EATKAENMIA HRDEIYSRPK
601: RTWFATEKEK KLLAKAAKES LDQVKGGSVV VSAQQAEDLR LKEKRRRERE KNLPRKKRRK LEAQREMLEE EKEDEEEAQE SKGGKKAKSS QSVVDVAYRR
701: AKSMKATGKT GIRASKGKND KGSKQPSEKG QTRQEEMHEL FQNDMSEWKQ GRSLKKKDTS FAKKSKNSFK SKSRYKRRK
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.