Factsheet for Bra038492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32273	Canola	nucleus	95.93	95.4
AT4G16630.1	Thale cress	nucleus	68.17	78.45
Bra040743.1-P	Field mustard	nucleus	73.68	76.54
KRH37947	Soybean	plastid	41.74	64.35
VIT_18s0001g14540.t01	Wine grape	nucleus	51.43	63.8
Solyc04g081580.2.1	Tomato	nucleus	51.76	63.17
KRH46113	Soybean	nucleus	52.64	63.14
KRG98832	Soybean	nucleus	52.64	62.98
PGSC0003DMT400025551	Potato	nucleus	51.54	62.82
GSMUA_Achr8P12970_001	Banana	nucleus	48.02	56.92
KRH37970	Soybean	cytosol	19.93	56.56
Zm00001d021127_P001	Maize	nucleus, plasma membrane	47.14	55.58
TraesCS5D01G385400.1	Wheat	nucleus	47.47	55.4
TraesCS5B01G378100.1	Wheat	nucleus	47.47	55.33
TraesCS5A01G375900.1	Wheat	nucleus	47.36	55.27
KXG35997	Sorghum	nucleus	48.02	54.91
Os12t0481100-01	Rice	nucleus	48.35	54.74
Zm00001d006113_P001	Maize	nucleus	47.47	54.63
HORVU5Hr1G093160.3	Barley	nucleus	47.36	51.74
Bra026724.1-P	Field mustard	nucleus	15.75	29.42
Bra029342.1-P	Field mustard	cytosol	13.99	28.1
Bra037574.1-P	Field mustard	nucleus	13.77	22.08
Bra004584.1-P	Field mustard	nucleus	14.87	21.99
Bra009114.1-P	Field mustard	nucleus	14.32	21.85
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	15.09	21.78
Bra028757.1-P	Field mustard	nucleus	14.21	21.72
Bra022336.1-P	Field mustard	nucleus	13.55	21.65
Bra009356.1-P	Field mustard	cytosol	13.33	21.57
Bra028652.1-P	Field mustard	nucleus	12.67	21.26
Bra024428.1-P	Field mustard	nucleus	13.77	21.15
Bra001713.1-P	Field mustard	nucleus	13.88	20.79
Bra003691.1-P	Field mustard	cytosol	17.62	18.78
Bra038650.1-P	Field mustard	mitochondrion	14.76	18.04
Bra002946.1-P	Field mustard	nucleus	14.76	18.01
Bra009355.1-P	Field mustard	mitochondrion, plastid	14.87	17.72
Bra027808.1-P	Field mustard	mitochondrion	13.33	15.49

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra038492	EnsemblPlants:Bra038492.1	EnsemblPlants:Bra038492.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FBM6
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00025444F9	SEG:seg	:	:	:	:

Description

AT4G16630 (E=5e-153) | DEAD/DEAH box helicase, putative (RH28)

Coordinates

chrA01:+:10886390..10892528

Molecular Weight (calculated)

102433.0 Da

IEP (calculated)

9.690

GRAVY (calculated)

-0.592

Length

908 amino acids

Sequence
(BLAST)

001: MSGAFFYDAD SDDELEFLNH ELNSSGEDKA EERKGQAEAE EDEDEKPRGG KRSTNAHSPW DFTSYSSSVG EEHPRRHTTS IDEKISKAIK HRPLPISTEE
101: EDEEDVSDAQ HGKQEEEEYL SEDEDTAELK AEAKPFFSTV DGVSFHADSF IKLNLPRPLI QACKTLGYEK PTPIQAACIP LAMLGRDLCA SAITGSGKTA
201: TFALPTLERL MYRPKRVSAT RALILTPTRE LAVQIHSMIQ KLAQYTDIKC GLIVGGLSVR EQEVVLRSMP DIVVATPGHR LLQTGFATEI QELVRLSPKR
301: RQTMLFSATM TDEVKELAKL SLNKPLRLSA DPSARRPPGL TEEVVRIRRT REANQEAVLL SLCTRTFKSK VIIFSGTKQA AHRLKILFGL AGLKAAELHG
401: NLTQAQRLDS LEHFRKQEVD FLIATDVAAR GLDIIGVQTV INYACPREID SYVHRVGRTA RAGRKGYAVT FVTDNDRSLL KVIAKKVGSK LKSRIIPEQS
501: IVKWSQIIDE MEDQYSAVIR EEREERALRK AEMEFAKAEN MIEHRDEIYA RPKRTWFMTE KEKKLVAKAE KDSARNPSGK ELISADIAED LKMKEKRKLE
601: REKNLPRKKR RKLEAAREML EDNEGEEDGE DQKRGRTRGM EKKKKQEPDK KGLTLVDLGY RRAKAVKAKQ RAIDSGKMDR PTPNKKQNLN RSEPKTQLRN
701: EEMKDMFKSD MSDKKQGTAK PKGKSKNSFK SKGRAAFAIP KRVFATRVLI LTPTRELAVQ IHSMIQKLAQ YTDIKCGLIV GGLSVREQGV VLRSMPDIVV
801: ATPGSMIDHL RNFMSVDLDD LSVLILYEAD LLLQTGFATE IQELVRSSPK RRQTMLFSAT VTEEVKELVK LSLNKPLRLS ADPSARRPPG LTEEYVSFYF
901: IISSLLNS

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.