Factsheet for Bra002946.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17287	Canola	nucleus	87.23	99.24
AT5G54910.1	Thale cress	nucleus	80.78	81.33
PGSC0003DMT400057202	Potato	nucleus	61.16	60.26
Solyc07g064520.2.1	Tomato	nucleus	61.02	60.21
KRH73730	Soybean	nucleus	59.54	59.38
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	55.65	56.4
KRH14417	Soybean	cytosol, nucleus	39.11	55.11
EER99450	Sorghum	nucleus	49.6	49.53
Zm00001d006497_P002	Maize	nucleus	48.39	48.13
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	47.58	46.64
TraesCS2B01G247500.1	Wheat	nucleus	47.45	46.26
TraesCS2D01G228000.1	Wheat	nucleus	47.45	46.2
Os07t0517000-01	Rice	nucleus	30.38	43.13
Bra024428.1-P	Field mustard	nucleus	28.36	35.7
Bra037574.1-P	Field mustard	nucleus	26.34	34.63
Bra022336.1-P	Field mustard	nucleus	26.34	34.51
Bra001713.1-P	Field mustard	nucleus	26.34	32.34
Bra029342.1-P	Field mustard	cytosol	18.28	30.09
Bra026724.1-P	Field mustard	nucleus	17.07	26.13
Bra004584.1-P	Field mustard	nucleus	20.97	25.41
Bra028652.1-P	Field mustard	nucleus	18.41	25.32
Bra009356.1-P	Field mustard	cytosol	18.95	25.13
Bra028757.1-P	Field mustard	nucleus	20.03	25.08
Bra009114.1-P	Field mustard	nucleus	20.03	25.04
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	17.47	20.67
Bra038650.1-P	Field mustard	mitochondrion	19.49	19.52
Bra027808.1-P	Field mustard	mitochondrion	19.89	18.95
Bra009355.1-P	Field mustard	mitochondrion, plastid	19.35	18.9
Bra003691.1-P	Field mustard	cytosol	20.56	17.96
Bra040743.1-P	Field mustard	nucleus	19.62	16.7
Bra038492.1-P	Field mustard	nucleus	18.01	14.76

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra002946	EnsemblPlants:Bra002946.1	EnsemblPlants:Bra002946.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CFG4	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002544291	SEG:seg	:	:

Description

AT5G54910 (E=6e-292) | DEAD/DEAH box helicase, putative

Coordinates

chrA10:-:6569109..6572069

Molecular Weight (calculated)

84017.2 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.553

Length

744 amino acids

Sequence
(BLAST)

001: MGRPKKTRGM KKQMRLDEAE EVIFLEQWIE SQKPDSGSNP LALGPLPKDA KIGKLEDGEN GAVFSCYAGV RRFDQLPISD KTKRGLKEAK FVEMVDIQRA
101: ALPHALCGRD ILGAARTGSG KTLAFVIPVL EKLHKERWGP EDGVGCIIIS PTRELAAQTF SVLNKVGKFH KFSAGLLIGG REGVDVEKER VNHMNVLVCA
201: PGRLLQHMDE TPNFECSNLK ILILDEADRV LDSAFKGQLD PIISQLPKRR QTLLFSATQT KKVKDLARLS LRDPEYISVH AESVTATPTT LTQTVIIVPV
301: EKKLDMLWSF IKSHLNYRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKLVDWV VQVDCPEDVA
401: SYIHRVGRTA RFNASGKSLL FLTPSEEKMV ERLQEARIPV RVTKANSDKL QEVSRLLASL LVNFPDLQTV AQRAFITYLR SIHKRRDKEI FDVTKLSIED
501: FSASLGLPFT PRIRFANLKT KKKGVFESSI ALEPENDDED NVVAPTRVVK KDLLGEDLEE EDFPLRPNEE GKGVEKSNKD EGVPMPGTRV SKNKKLKISQ
601: HRPSGSRVKF DEEGNPVAPL AIVAATTETE VALDEEARKD YYKKLGEQLR KVDHEDKKVE REKRREKRMK EKIKRKQGEM EEEEEEEGSA SSEEETGQKR
701: KRAKKMYFDD NGDGDEEKEG GKINTDAISI AELEEMALKL ITQS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.