CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 25724727
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724727 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan. Electronic address: skomatsu@affrc.go.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14417	Soybean	cytosol, nucleus	68.63	96.97
PGSC0003DMT400057202	Potato	nucleus	66.76	65.96
Solyc07g064520.2.1	Tomato	nucleus	66.22	65.52
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	60.86	61.85
CDY17287	Canola	nucleus	53.08	60.55
AT5G54910.1	Thale cress	nucleus	59.52	60.08
Bra002946.1-P	Field mustard	nucleus	59.38	59.54
EER99450	Sorghum	nucleus	54.02	54.09
Zm00001d006497_P002	Maize	nucleus	52.68	52.54
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	52.95	52.04
TraesCS2B01G247500.1	Wheat	nucleus	52.81	51.64
TraesCS2D01G228000.1	Wheat	nucleus	52.81	51.57
Os07t0517000-01	Rice	nucleus	35.25	50.19
KRH54795	Soybean	nucleus	26.54	36.2
KRH62970	Soybean	nucleus	26.27	36.16
KRH56711	Soybean	nucleus	27.35	35.66
KRH03838	Soybean	nucleus	27.35	35.48
KRH65120	Soybean	cytosol	19.03	32.35
KRH48210	Soybean	nucleus	12.87	30.0
KRH12590	Soybean	nucleus	19.97	27.44
KRH37539	Soybean	nucleus	19.71	27.27
KRG97683	Soybean	nucleus	21.31	26.99
KRH31184	Soybean	nucleus	21.98	24.66
KRH37970	Soybean	cytosol	10.32	24.06
KRH43700	Soybean	cytosol	17.29	22.01
KRH13749	Soybean	cytosol, plastid	17.43	22.0
KRH47920	Soybean	nucleus	20.38	21.62
KRH41139	Soybean	nucleus	19.44	20.51
KRH09570	Soybean	nucleus	20.78	19.95
KRH37947	Soybean	plastid	15.68	19.86
KRH64859	Soybean	nucleus	20.51	19.69
KRH48208	Soybean	nucleus	20.24	18.64
KRH06491	Soybean	nucleus	20.11	18.61
KRG98832	Soybean	nucleus	18.9	18.58
KRH46113	Soybean	nucleus	18.77	18.49
KRH59841	Soybean	nucleus	12.33	17.39
KRH65117	Soybean	plastid	19.03	17.23
KRH54980	Soybean	nucleus	4.02	16.85

Protein Annotations

EntrezGene:100792106	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001288	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
EnsemblPlantsGene:GLYMA_02G290500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
UniProt:I1JJ86	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH73730	ProteinID:KRH73730
ProteinID:KRH73730.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000233736A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:47007571..47012272

Molecular Weight (calculated)

85031.5 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.538

Length

746 amino acids

Sequence
(BLAST)

001: MRRPKSREFR KQQRVSEEEE INLLNSWIQF QPPDSGSNPM SLPPLPKNSP VGRLDDDDTY SRYAGASRFE QFPLSKKTKD ALRESKFVVM TDIQRASLPH
101: ALCGRDILGA AKTGSGKTLA FIIPVLEKLH RERWGPEDGV GSIIISPTRE LAAQLFDVLK VVGKHHNFSA GLLIGGRKDV DMEKERVNEL NILICTPGRL
201: LQHMDETPNF DCSQMQVLVL DEADRILDSG FKKELNAIIS QLPKRRQTLL FSATQTKSIQ DLARLSLKDP EYLSVHEESV TSTPTLLKQI VMIVPLEQKL
301: DMLWSFIKTH LQSKTLVFLS SCKQVKFVFE AFKKLHPGIP LKCLHGRMKQ ERRMAIYSEF CEKRSVLFST DVAARGLDFN KAVDWVVQVD CPENVASYIH
401: RVGRTARYKS DGKSVLFLLP SEIQMLEKLK AAKVPVHFNK PRKELLQPVS SLLASLLVKY PDMQHRAQRA FITYLRSIHI QKDKDIFDVM KLPIDEYSAS
501: LGLPMTPKIR FLNQKIKSKD VSTKSILVEP EDSDKETIFE VSRKKLDTVA FKDEETENDL LQLADTANEG EVKSSEIEEI IPATRVLKKK KLKINVHRPL
601: GTRVVFDDEG HTLPPLARIA DTQSGKEMLL DPEQKAEYYR RMRDDLKKAD KEDKLIERQR LREKRIKQKM KWKAGNAEED DQDDISGSEG DETVDRLHKK
701: SKVYFDSDSD EGERNEVTGN ARTSTGGVTL EEQEALALKL LNSMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.