Factsheet for TraesCS2D01G228000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	98.04	98.68
TraesCS2B01G247500.1	Wheat	nucleus	98.43	98.56
EER99450	Sorghum	nucleus	76.31	78.25
Zm00001d006497_P002	Maize	nucleus	75.39	77.01
Os07t0517000-01	Rice	nucleus	52.49	76.53
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	52.36	54.5
KRH73730	Soybean	nucleus	51.57	52.81
PGSC0003DMT400057202	Potato	nucleus	51.18	51.79
Solyc07g064520.2.1	Tomato	nucleus	50.52	51.19
KRH14417	Soybean	cytosol, nucleus	35.34	51.14
CDY17287	Canola	nucleus	42.02	49.08
AT5G54910.1	Thale cress	nucleus	47.12	48.71
Bra002946.1-P	Field mustard	nucleus	46.2	47.45
TraesCS6D01G292400.1	Wheat	nucleus	22.12	30.56
TraesCS5D01G127000.1	Wheat	nucleus	23.17	30.52
TraesCS5D01G050600.1	Wheat	nucleus	21.73	29.7
TraesCS2D01G131200.1	Wheat	nucleus	16.49	27.51
TraesCS7D01G309800.1	Wheat	nucleus	10.86	26.6
TraesCS6D01G103400.1	Wheat	nucleus	15.31	26.35
TraesCS3D01G230300.1	Wheat	nucleus	18.06	25.65
TraesCS3D01G100800.1	Wheat	plastid	20.29	24.11
TraesCS3D01G230400.2	Wheat	mitochondrion	18.32	23.81
TraesCS1D01G031400.1	Wheat	nucleus	18.98	23.69
TraesCS2D01G160100.1	Wheat	cytosol	15.31	22.94
TraesCS5D01G385400.1	Wheat	nucleus	18.59	18.25
TraesCS4D01G337100.1	Wheat	nucleus	19.63	17.63
TraesCS6D01G392700.1	Wheat	cytosol	17.93	16.27
TraesCS2D01G363700.1	Wheat	nucleus	17.67	16.15
TraesCS7D01G328100.1	Wheat	mitochondrion	18.85	15.02

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2D01G228000	EnsemblPlants:TraesCS2D01G228000.1
TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:196707656..196711246

Molecular Weight (calculated)

86062.6 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.573

Length

764 amino acids

Sequence
(BLAST)

001: MRRPQRRALA KQSRAKDGDE IRLLEAWIDA GKPLPGTKPP PPSEESSAAN ARARARDVVA KAAAGDYSDY GASTRFDELP LSKKTKDALR KAGYKEMSEI
101: QRAALPHALC GHDVLGAAKT GSGKTLAFVI PVIEKLYREK WSQEDGVGCI ILSPTNDLAG QIWEVVRKVG KHHNFSGGAI VKRTGIEQEK ERINSLNILV
201: CTPGRLVQHF DETPNFDCSN LQILVLDEAD QILDKNFKSQ VDIILSQIPK ARQTLLFSAT QTKSVKDLAR VSLKNPEYIS VHEQASTATP DNLEQCAMIV
301: PLEQKLNMLW SFIKRHLKSK ILVFLSSVKQ VKFVYEIFKK LRPGIPLKCM HGRMKYEVQQ AIVAEFSEST SVLFSTDIFA RGLDIGNVDW VVQVDCPESV
401: ALYIHRVGRT ARYNKKGKSL IFLCPEEERM LEKLKATESK IPINVRKPKV EQLEQISQNV AAVLVKFPNL QQLGKRAFVT YLKSVYLQGD KEVFDLSRFS
501: AESFAAYASS LGLPVTPKIR FVSHKKNVSK KDMKDIDVKQ MKHKAEVIEI NPQVNRYMLA DDGPDDDILY PKKPNTDANI YDGLDDILSP KVPGTDTHME
601: PEKIDELAAR PLKKKKLKIN MHRPVGTRVK YDDEGNAIDP LASLAEEVGP EDVIHKDKIL QRYAEMLREM QEDDKEDKAQ HKKSLHEKKF EKKMKLKRRR
701: QEETDAVSDD SGSEPDRNQN MSSKGKKKYF NNSDDDEGGD AAKGRDLLAQ QEALALKLLG KMHD

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.