Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G455000.1 | Wheat | cytosol | 98.81 | 98.7 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 84.68 | 93.82 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 98.1 | 93.23 |
| EES07789 | Sorghum | mitochondrion | 77.55 | 79.34 |
| Os02t0826100-01 | Rice | cytosol | 76.37 | 79.28 |
| Zm00001d018516_P002 | Maize | mitochondrion | 76.01 | 78.24 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 38.84 | 73.15 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 54.04 | 60.34 |
| KRH41139 | Soybean | nucleus | 50.48 | 60.11 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 11.05 | 58.12 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 51.54 | 53.85 |
| CDY45370 | Canola | mitochondrion | 49.64 | 53.45 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 51.07 | 53.42 |
| Bra027808.1-P | Field mustard | mitochondrion | 49.52 | 53.39 |
| CDY49890 | Canola | mitochondrion | 49.17 | 53.08 |
| KRH59841 | Soybean | nucleus | 32.54 | 51.8 |
| AT1G63250.1 | Thale cress | mitochondrion | 49.05 | 51.75 |
| TraesCS3D01G230300.1 | Wheat | nucleus | 31.83 | 49.81 |
| AT2G07750.1 | Thale cress | plastid | 48.69 | 48.52 |
| TraesCS3D01G230400.2 | Wheat | mitochondrion | 32.66 | 46.77 |
| TraesCS7D01G328100.1 | Wheat | mitochondrion | 36.58 | 32.12 |
| TraesCS2D01G131200.1 | Wheat | nucleus | 14.37 | 26.42 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 13.9 | 26.35 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 18.05 | 26.21 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 17.1 | 26.04 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 16.98 | 25.58 |
| TraesCS1D01G031400.1 | Wheat | nucleus | 17.7 | 24.35 |
| TraesCS2D01G160100.1 | Wheat | cytosol | 14.13 | 23.33 |
| TraesCS3D01G100800.1 | Wheat | plastid | 16.27 | 21.31 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 7.13 | 19.23 |
| KRH54980 | Soybean | nucleus | 3.92 | 18.54 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 16.98 | 18.38 |
| TraesCS2D01G228000.1 | Wheat | nucleus | 16.27 | 17.93 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 17.22 | 17.34 |
| TraesCS4D01G337100.1 | Wheat | nucleus | 14.01 | 13.87 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF324 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6D01G392700 | EnsemblPlants:TraesCS6D01G392700.1 | TIGR:cd00079 | TIGR:cd00268 | : |
Description
No Description!
Coordinates
chr6D:-:467031430..467035898
Molecular Weight (calculated)
94842.0 Da
IEP (calculated)
9.782
GRAVY (calculated)
-0.508
Length
842 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGPRTFPG GLSKWQHKRM HEKLARGKER GLLRHEKQLY LARLRSEIRA SHLPGAPASP ADHAGPTSSR AHIRALADRF LRPGAEDLWN DDDGPLRRAR
101: LPPHQQQPAR SLPSGARMVD WKQVESGEKL KPPRGGGDWK DWEELDSGEP TAGRGAGNEQ RLPAAFNQRR GYGTAAPWWW QWSPGSGTPS QRKEASFGFF
201: GPKRCYSVMP PCSPCRESGA ALMPLVARQL AEAGDGRNAT PLALFYTQER LYSVAAPRRF GQKWRPDSSD EDGEVMPAAR DLRLAKFVAS REDESEDDEP
301: GETSAIRRKW STAALRNCDM KRDRRPLKSY EEESDDDITG RIQELREEIR NREVLGAERR RYESRGESVF TNKRFDECGI SPLTVKALTD AGYIQTTVVQ
401: EATLPVCLEG KDVLVKAKTG TGKSVAFLLP AIESVLNAMK SHTNHRVSPI FALVLCPTRE LAVQVTAEAN VLVKYHHGVG VQSLIGGTRF KLDQRRLESD
501: PCQILVATPG RLLDHIENRS SFSVRLMGLK LLVLDEADHL LDLGFRKDIE KIADSLPRQR QTLLFSATVP KEVRRVSQMV LNKDHVFVDT VGLGAVETPT
601: KVQQQYLVVP HELHFHMVHH LLREHIDQEV DYKVIVFCTT AMVTEFMYIM LRVLKLNVRE IHSRKPQLYR TRISEEFRDS NRLILVTSDV STRGVNYPDV
701: TLVIQAGVPP GREHYIHRLG RTGREGKSGK GILLIAPWEE YFLKEIHDLP IQKAPVPQID QEMKQKVDDS IKIVDMSIKE AAYHAWLGYY NSIADISRDK
801: VMLADLASRF GVSIGMEKPP SLFRKTALKM GLKGVPGIRI RK
101: LPPHQQQPAR SLPSGARMVD WKQVESGEKL KPPRGGGDWK DWEELDSGEP TAGRGAGNEQ RLPAAFNQRR GYGTAAPWWW QWSPGSGTPS QRKEASFGFF
201: GPKRCYSVMP PCSPCRESGA ALMPLVARQL AEAGDGRNAT PLALFYTQER LYSVAAPRRF GQKWRPDSSD EDGEVMPAAR DLRLAKFVAS REDESEDDEP
301: GETSAIRRKW STAALRNCDM KRDRRPLKSY EEESDDDITG RIQELREEIR NREVLGAERR RYESRGESVF TNKRFDECGI SPLTVKALTD AGYIQTTVVQ
401: EATLPVCLEG KDVLVKAKTG TGKSVAFLLP AIESVLNAMK SHTNHRVSPI FALVLCPTRE LAVQVTAEAN VLVKYHHGVG VQSLIGGTRF KLDQRRLESD
501: PCQILVATPG RLLDHIENRS SFSVRLMGLK LLVLDEADHL LDLGFRKDIE KIADSLPRQR QTLLFSATVP KEVRRVSQMV LNKDHVFVDT VGLGAVETPT
601: KVQQQYLVVP HELHFHMVHH LLREHIDQEV DYKVIVFCTT AMVTEFMYIM LRVLKLNVRE IHSRKPQLYR TRISEEFRDS NRLILVTSDV STRGVNYPDV
701: TLVIQAGVPP GREHYIHRLG RTGREGKSGK GILLIAPWEE YFLKEIHDLP IQKAPVPQID QEMKQKVDDS IKIVDMSIKE AAYHAWLGYY NSIADISRDK
801: VMLADLASRF GVSIGMEKPP SLFRKTALKM GLKGVPGIRI RK
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Arabidopsis Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.