Factsheet for TraesCS5D01G127000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G120400.1	Wheat	nucleus	97.93	97.93
TraesCS5A01G114200.1	Wheat	nucleus	97.76	97.76
Os03t0802700-01	Rice	nucleus	82.24	80.85
EER90714	Sorghum	nucleus	82.59	76.89
GSMUA_Achr10P...	Banana	cytosol	66.21	74.27
Zm00001d013056_P001	Maize	nucleus	81.38	71.95
TraesCS6D01G292400.1	Wheat	nucleus	67.93	71.25
TraesCS5D01G050600.1	Wheat	nucleus	67.59	70.13
VIT_17s0000g04310.t01	Wine grape	cytosol	62.07	65.45
TraesCS7D01G309800.1	Wheat	nucleus	35.0	65.06
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	61.72	64.16
KRH56711	Soybean	nucleus	62.76	63.64
KRH62970	Soybean	nucleus	59.14	63.28
KRH03838	Soybean	nucleus	62.41	62.96
PGSC0003DMT400063252	Potato	nucleus	61.38	62.9
Solyc03g114370.2.1	Tomato	nucleus	61.21	62.72
KRH54795	Soybean	nucleus	58.62	62.16
CDX99342	Canola	nucleus	55.52	56.69
Bra022336.1-P	Field mustard	nucleus	55.34	56.51
CDX92251	Canola	nucleus	55.17	56.24
CDX82336	Canola	nucleus	55.34	56.02
Bra037574.1-P	Field mustard	nucleus	54.66	56.01
CDY18530	Canola	nucleus	54.83	55.99
CDX95512	Canola	nucleus	54.66	55.61
CDX75974	Canola	nucleus	55.69	55.5
AT3G18600.1	Thale cress	nucleus	54.14	55.28
Bra001713.1-P	Field mustard	nucleus	55.52	53.14
CDY36514	Canola	nucleus	52.76	52.49
Bra024428.1-P	Field mustard	nucleus	52.76	51.78
CDY08740	Canola	nucleus	52.76	51.52
AT5G65900.1	Thale cress	nucleus	52.76	48.34
TraesCS2D01G131200.1	Wheat	nucleus	24.31	30.79
TraesCS6D01G103400.1	Wheat	nucleus	23.1	30.18
TraesCS3D01G230300.1	Wheat	nucleus	26.9	29.0
TraesCS1D01G031400.1	Wheat	nucleus	30.17	28.59
TraesCS3D01G230400.2	Wheat	mitochondrion	27.41	27.04
TraesCS2D01G160100.1	Wheat	cytosol	22.76	25.88
TraesCS3D01G100800.1	Wheat	plastid	26.9	24.26
TraesCS2D01G228000.1	Wheat	nucleus	30.52	23.17
TraesCS5D01G385400.1	Wheat	nucleus	24.66	18.38
TraesCS6D01G392700.1	Wheat	cytosol	26.21	18.05
TraesCS4D01G337100.1	Wheat	nucleus	24.14	16.45
TraesCS7D01G328100.1	Wheat	mitochondrion	26.9	16.27
TraesCS2D01G363700.1	Wheat	nucleus	21.21	14.71

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5D01G127000	EnsemblPlants:TraesCS5D01G127000.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:197144207..197150313

Molecular Weight (calculated)

65493.2 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.606

Length

580 amino acids

Sequence
(BLAST)

001: MGSAKSSKSS KKRKPAAPPP ESDSEQEETV HETAAAEEFN QEEQPQPQQQ SDAGDEQHEH GKEAQETGKE KKKKKDKEGS GILTSMLFSE LPISELTAKA
101: IREMNYTHLA QIQARSIPHL LEGRDVMGAA KTGSGKTLAF LIPAIELLYN LHFSPRNGTG VIVVCPTREL AIQTQNVAKE LMKYHSQTLG YVIGGNGRRT
201: EADQLAKGVN LLVATPGRLL DHLQNTKGFI YRRLKCLIID EADRILEQNF EEDMKQIFKR LPQNRQTVLF SATQTKEVED FAKLSFEKNE ERKEKPVYIS
301: VDDGKSNATV EGLQQGYCVI PSDKRFLVLY AFLKKKQSKK VMVFFSSCSS VKFHAELLNF LQIECEDIHG KQKQQKRTTT FFNFCKAEKG ILLCTNVAAR
401: GLDIPDVDYI VQYDPPDEPK DYIHRVGRTA RGEKGKGSAL LFLLPQELKF LIYLKAAKIS LTEYEFNNKN VPNLQSHLEN IVVENYFLNQ SAKEAYRSYI
501: LAYNSHAMKD IFNVHDLDMK AVAASFCFKN PPKVNLDLES SASKRRKTRK VDGGARRHGI NAANPYGWKG GDDNRQFARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.