Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G213800.1 | Wheat | nucleus | 91.35 | 92.23 |
| TraesCS7A01G313300.1 | Wheat | nucleus | 89.74 | 90.61 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 65.06 | 35.0 |
| GSMUA_Achr10P... | Banana | cytosol | 57.69 | 34.82 |
| GSMUA_Achr7P07500_001 | Banana | cytosol, nucleus, peroxisome | 55.77 | 31.18 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 54.49 | 30.74 |
| KRH62970 | Soybean | nucleus | 51.6 | 29.7 |
| VIT_17s0000g04310.t01 | Wine grape | cytosol | 51.92 | 29.45 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 52.56 | 29.34 |
| KRH54795 | Soybean | nucleus | 50.32 | 28.7 |
| Solyc03g114370.2.1 | Tomato | nucleus | 51.6 | 28.45 |
| PGSC0003DMT400063252 | Potato | nucleus | 51.28 | 28.27 |
| KRH56711 | Soybean | nucleus | 51.28 | 27.97 |
| KRH03838 | Soybean | nucleus | 50.96 | 27.65 |
| CDX99342 | Canola | nucleus | 44.87 | 24.65 |
| Bra022336.1-P | Field mustard | nucleus | 44.87 | 24.65 |
| CDX92251 | Canola | nucleus | 44.87 | 24.6 |
| CDX82336 | Canola | nucleus | 44.87 | 24.43 |
| Bra037574.1-P | Field mustard | nucleus | 44.23 | 24.38 |
| CDY18530 | Canola | nucleus | 44.23 | 24.3 |
| CDX95512 | Canola | nucleus | 44.23 | 24.21 |
| CDX75974 | Canola | nucleus | 44.87 | 24.05 |
| AT3G18600.1 | Thale cress | nucleus | 43.27 | 23.77 |
| Bra024428.1-P | Field mustard | nucleus | 44.87 | 23.69 |
| CDY36514 | Canola | nucleus | 44.23 | 23.67 |
| CDY08740 | Canola | nucleus | 44.87 | 23.57 |
| Bra001713.1-P | Field mustard | nucleus | 44.87 | 23.1 |
| AT5G65900.1 | Thale cress | nucleus | 44.55 | 21.96 |
| TraesCS1D01G031400.1 | Wheat | nucleus | 27.56 | 14.05 |
| TraesCS3D01G230300.1 | Wheat | nucleus | 20.83 | 12.08 |
| TraesCS2D01G131200.1 | Wheat | nucleus | 17.31 | 11.79 |
| TraesCS3D01G100800.1 | Wheat | plastid | 24.04 | 11.66 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 16.35 | 11.49 |
| TraesCS3D01G230400.2 | Wheat | mitochondrion | 20.83 | 11.05 |
| TraesCS2D01G228000.1 | Wheat | nucleus | 26.6 | 10.86 |
| TraesCS2D01G160100.1 | Wheat | cytosol | 15.71 | 9.61 |
| TraesCS4D01G337100.1 | Wheat | nucleus | 21.79 | 7.99 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 19.23 | 7.13 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 17.63 | 7.07 |
| TraesCS7D01G328100.1 | Wheat | mitochondrion | 21.47 | 6.99 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 16.35 | 6.1 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G309800.1 | EnsemblPlantsGene:TraesCS7D01G309800 | Gene3D:3.40.50.300 | InterPro:DUF4217 | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:P-loop_NTPase | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF305 | PFAM:PF00271 | PFAM:PF13959 | PFscan:PS51194 |
| SEG:seg | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | TIGR:cd00079 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7D:+:393099992..393101601
Molecular Weight (calculated)
35173.6 Da
IEP (calculated)
7.386
GRAVY (calculated)
-0.476
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPAASSTGS AERPTESEQT VYCTAATVET GQEPAEQTVD EEQETCRRQA NAEGLQLGYS VVPSEKWFLV LHAFLKRKQS SKKVMVLFSS RSSVKFHVQL
101: LNFLQIECAD IHEKQEQHDR TATFSAFCAA EKSILLCTNV AARGLDLPHV DYIVQYDPPA DEPEDYIHHV GRTAPGDKGK PTVLLFLLPQ ELEFLISLRA
201: ANIHLTEHQF NNKNVPNLQA HFEKIVGENY FLHQSAQQAY RSYILAYNSH AMKDIFNVHS LSLKDVAASF CFRNPPKVDI GLEGRAMKKV GYNRGPDSRE
301: RRTRRRINAA NP
101: LNFLQIECAD IHEKQEQHDR TATFSAFCAA EKSILLCTNV AARGLDLPHV DYIVQYDPPA DEPEDYIHHV GRTAPGDKGK PTVLLFLLPQ ELEFLISLRA
201: ANIHLTEHQF NNKNVPNLQA HFEKIVGENY FLHQSAQQAY RSYILAYNSH AMKDIFNVHS LSLKDVAASF CFRNPPKVDI GLEGRAMKKV GYNRGPDSRE
301: RRTRRRINAA NP
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.