Factsheet for Bra001713.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82336	Canola	nucleus	91.75	97.03
CDX75974	Canola	nucleus	92.41	96.22
Bra022336.1-P	Field mustard	nucleus	88.61	94.54
Bra037574.1-P	Field mustard	nucleus	86.96	93.11
AT3G18600.1	Thale cress	nucleus	81.02	86.44
PGSC0003DMT400063252	Potato	nucleus	62.38	66.78
Solyc03g114370.2.1	Tomato	nucleus	61.55	65.9
VIT_17s0000g04310.t01	Wine grape	cytosol	59.41	65.45
GSMUA_Achr10P...	Banana	cytosol	54.79	64.22
KRH62970	Soybean	nucleus	57.1	63.84
KRH03838	Soybean	nucleus	60.07	63.3
KRH54795	Soybean	nucleus	56.6	62.71
KRH56711	Soybean	nucleus	59.08	62.59
Bra024428.1-P	Field mustard	nucleus	56.6	58.04
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	46.7	56.94
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	51.32	55.73
TraesCS5B01G120400.1	Wheat	nucleus	53.14	55.52
TraesCS5A01G114200.1	Wheat	nucleus	53.14	55.52
TraesCS5D01G127000.1	Wheat	nucleus	53.14	55.52
TraesCS6D01G292400.1	Wheat	nucleus	50.0	54.79
TraesCS6A01G312900.1	Wheat	nucleus	49.67	54.43
EER90714	Sorghum	nucleus	55.61	54.09
Os03t0802700-01	Rice	nucleus	52.64	54.07
TraesCS6B01G342900.1	Wheat	nucleus	48.51	53.85
TraesCS5A01G042300.1	Wheat	nucleus	50.33	52.95
TraesCS6A01G356000.1	Wheat	nucleus	49.17	52.01
OQU76528	Sorghum	nucleus	51.32	51.92
TraesCS5D01G050600.1	Wheat	nucleus	47.85	51.88
Os06t0535100-00	Rice	nucleus	49.17	51.2
Zm00001d013056_P001	Maize	nucleus	54.62	50.46
KXG37786	Sorghum	nucleus	37.29	49.89
HORVU5Hr1G010160.3	Barley	cytosol	49.51	49.83
Zm00001d000431_P001	Maize	plastid	39.93	49.79
Zm00001d023501_P001	Maize	nucleus	49.01	49.25
TraesCS7B01G213800.1	Wheat	nucleus	23.27	45.63
TraesCS7A01G313300.1	Wheat	nucleus	23.27	45.63
TraesCS7D01G309800.1	Wheat	nucleus	23.1	44.87
Bra029342.1-P	Field mustard	cytosol	24.75	33.19
Bra004584.1-P	Field mustard	nucleus	29.87	29.48
Bra026724.1-P	Field mustard	nucleus	23.1	28.81
Bra028652.1-P	Field mustard	nucleus	24.75	27.73
Bra009114.1-P	Field mustard	nucleus	26.24	26.72
Bra028757.1-P	Field mustard	nucleus	26.07	26.6
Bra009356.1-P	Field mustard	cytosol	24.59	26.56
Bra002946.1-P	Field mustard	nucleus	32.34	26.34
Bra038650.1-P	Field mustard	mitochondrion	25.41	20.73
Bra009355.1-P	Field mustard	mitochondrion, plastid	25.58	20.34
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	20.13	19.4
Bra027808.1-P	Field mustard	mitochondrion	23.76	18.44
Bra003691.1-P	Field mustard	cytosol	23.27	16.55
Bra040743.1-P	Field mustard	nucleus	22.61	15.68
Bra038492.1-P	Field mustard	nucleus	20.79	13.88

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra001713	EnsemblPlants:Bra001713.1	EnsemblPlants:Bra001713.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CBY3	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000254047E	SEG:seg	:

Description

AT3G18600 (E=3e-143) | DEAD/DEAH box helicase, putative

Coordinates

chrA03:-:18008431..18011485

Molecular Weight (calculated)

68406.9 Da

IEP (calculated)

9.341

GRAVY (calculated)

-0.402

Length

606 amino acids

Sequence
(BLAST)

001: MVELEKKSSD EVKKRIRKRN RGKKNEQQRA EEEEETHLVE EKADEVHNKK EKKVTKVKSQ GGDKTEEEVE AKEEEEETKM VVVGKGIMTN ETFESLELSE
101: QTFEAIKTMG FEHMTQIQAG SIPPLLEGKD VLGAARTGSG KTLAFLIPAV ELLFKERFSP RNGTGVIVIC PTRELAIQTK NVAEELLKHH SLTVSMVIGG
201: NNRRTEAQRI ANGSNLLIAT PGRLLDHLQH TKGFIYKHLK CLVIDEADRI LEENFEEDMN KILKILPKLK PTGEIALQIM CQSVWLYYGL DFVLIKALTM
301: FLQTRQTALF SATQTSKVQD LARVSLTSPV LVDVDDGRRK VTNEGLEQGY CVVPSEKRLL LLISFLKKNL NKKIMVFFST CKSVQFHAEI MKLINVESCD
401: IHGGLDQNRR TKTFFDFMKA EKGILLCTDV AARGLDIPSV DWIIQYDPPD KPTEYIHRVG RTARGEGAKG KALLVLIPEE LQFIRYLKAA KVPVKELEFN
501: EKKLLNVRSA LEKYVANDYN LNKIAKEAYR AYIAAYNSHS LKDIFNVHRL DLQAVALSFC FSSPPKVHLN IESGAGKVRK ARNQQGRNGF SPYSPYGKGK
601: STPKEA

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.