Factsheet for Zm00001d013056_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90714	Sorghum	nucleus	88.87	93.58
Os03t0802700-01	Rice	nucleus	73.78	82.03
TraesCS5B01G120400.1	Wheat	nucleus	72.1	81.55
TraesCS5D01G127000.1	Wheat	nucleus	71.95	81.38
TraesCS5A01G114200.1	Wheat	nucleus	71.95	81.38
GSMUA_Achr10P...	Banana	cytosol	57.32	72.73
Zm00001d023501_P001	Maize	nucleus	64.63	70.32
Zm00001d000431_P001	Maize	plastid	48.63	65.64
VIT_17s0000g04310.t01	Wine grape	cytosol	54.73	65.27
KRH62970	Soybean	nucleus	52.59	63.65
PGSC0003DMT400063252	Potato	nucleus	54.88	63.6
KRH56711	Soybean	nucleus	55.18	63.29
Solyc03g114370.2.1	Tomato	nucleus	54.42	63.07
KRH03838	Soybean	nucleus	55.18	62.96
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	53.2	62.54
KRH54795	Soybean	nucleus	51.83	62.16
CDX99342	Canola	nucleus	50.91	58.8
Bra022336.1-P	Field mustard	nucleus	50.91	58.8
CDX92251	Canola	nucleus	50.76	58.52
Bra037574.1-P	Field mustard	nucleus	50.0	57.95
CDX82336	Canola	nucleus	50.46	57.77
CDY18530	Canola	nucleus	50.0	57.75
AT3G18600.1	Thale cress	nucleus	50.0	57.75
CDX95512	Canola	nucleus	50.15	57.72
CDX75974	Canola	nucleus	50.76	57.22
Bra001713.1-P	Field mustard	nucleus	50.46	54.62
CDY36514	Canola	nucleus	46.49	52.32
Bra024428.1-P	Field mustard	nucleus	46.95	52.12
CDY08740	Canola	nucleus	46.95	51.85
AT5G65900.1	Thale cress	nucleus	48.17	49.92
Zm00001d027279_P001	Maize	nucleus	13.57	31.23
Zm00001d010225_P001	Maize	plasma membrane	24.39	31.13
Zm00001d014787_P001	Maize	nucleus	21.8	30.75
Zm00001d024719_P001	Maize	nucleus	15.4	29.88
Zm00001d044203_P001	Maize	plasma membrane	23.93	28.04
Zm00001d048477_P001	Maize	plastid	7.93	27.81
Zm00001d041799_P001	Maize	cytosol	10.98	27.27
Zm00001d044208_P001	Maize	plastid	24.09	26.96
Zm00001d022246_P001	Maize	cytosol	20.58	25.96
Zm00001d006497_P002	Maize	nucleus	26.83	23.53
Zm00001d039746_P001	Maize	nucleus	24.85	22.48
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	11.13	20.17
Zm00001d021127_P001	Maize	nucleus, plasma membrane	22.71	19.35
Zm00001d006113_P001	Maize	nucleus	23.17	19.26
Zm00001d018516_P002	Maize	mitochondrion	23.93	19.19
Zm00001d050315_P001	Maize	nucleus	23.17	18.1
Zm00001d046097_P001	Maize	mitochondrion	24.39	17.09
Zm00001d003031_P002	Maize	nucleus	19.66	15.25
Zm00001d032317_P001	Maize	nucleus	10.37	13.91

Protein Annotations

EntrezGene:100501728	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6GFC7	ProteinID:AQK62279.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000842BA71	EnsemblPlantsGene:Zm00001d013056	EnsemblPlants:Zm00001d013056_P001	EnsemblPlants:Zm00001d013056_T001
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 51

Coordinates

chr5:+:3926636..3931723

Molecular Weight (calculated)

74350.3 Da

IEP (calculated)

7.809

GRAVY (calculated)

-0.806

Length

656 amino acids

Sequence
(BLAST)

001: MCPAAATTSS AKPSKKRKQP VIAPPESDSE EESVYDTASD DDEEEEETQE LESEDVDEEV EEGSEGGEEN EIGDDSEVEE EEVKEKKEKE ETVKEKKEKK
101: DMKQEGKKAK KQEEKKAKKD KKEEEKKVME DKKEEEKKAK KKSEGSGILS NKLFSELPLS ELTAKAIREM NYTHLTQIQA RSIPHLLEGN DVMGAAKTGS
201: GKTLAFLIPA IEMLYHTHFS PRNGTGAIVV CPTRELAIQT HNVAKELMKY HSQTLGYVIG GNNRRSEADQ LAKGINLLVA TPGRLLDHLQ NTKSFIYRRL
301: KCLVIDEADR ILEQNFEEDM KQIFKRLPQN RQTVLFSATQ TPEVEKFAKL SFEKNEESKK KPVYVGVDDD KSKATVEGLQ QGYCVISSDK RFLVLYAFLR
401: KKRNKKIMVF FSSCNSVKFH AELLNFLGIE CSDIHGKQKQ QKRTTTFFSF CKAEKGILLC TNVAARGLDI PDVDYILQYD PPDEPKDYIH RVGRTARGEK
501: GKGSALLFLL PEELKFLIYL KAAKVTLTEY EFNQKNVPNL QSQLLTRADE QENIVGENYF LNQSAKEAYR SYVLAYDSHS MKDIFNVHQL DLQKVAASFG
601: FKNPPKVNLD LDSSAAKHRK KMRRVDGGKR HGISASNPYG RKDKGGAGDK RQLARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.