Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22065420
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93356 | Sorghum | cytosol | 95.19 | 39.21 |
| Zm00001d014787_P001 | Maize | nucleus | 93.05 | 37.42 |
| KRH48210 | Soybean | nucleus | 57.75 | 33.75 |
| TraesCS2D01G131200.1 | Wheat | nucleus | 77.54 | 31.66 |
| TraesCS2A01G128700.1 | Wheat | nucleus | 76.47 | 31.22 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 72.73 | 30.63 |
| Os03t0669000-01 | Rice | cytosol, nucleus, plastid | 75.94 | 30.08 |
| TraesCS6A01G114900.1 | Wheat | nucleus | 72.73 | 29.76 |
| Os07t0660000-00 | Rice | cytosol | 69.52 | 29.21 |
| HORVU2Hr1G022490.2 | Barley | nucleus | 76.47 | 29.01 |
| TraesCS6B01G142500.1 | Wheat | mitochondrion, nucleus | 73.8 | 28.75 |
| TraesCS2B01G150800.1 | Wheat | mitochondrion | 77.01 | 27.91 |
| VIT_01s0010g01890.t01 | Wine grape | nucleus | 60.43 | 27.49 |
| Solyc10g007550.2.1 | Tomato | cytosol, nucleus | 60.96 | 25.97 |
| KRH65120 | Soybean | cytosol | 59.89 | 25.51 |
| HORVU6Hr1G020570.1 | Barley | plastid | 76.47 | 25.27 |
| CDY42845 | Canola | cytosol | 57.75 | 24.05 |
| CDY47007 | Canola | cytosol | 57.75 | 24.05 |
| Bra029342.1-P | Field mustard | cytosol | 57.75 | 23.89 |
| AT5G60990.1 | Thale cress | nucleus | 56.68 | 23.25 |
| VIT_11s0065g01090.t01 | Wine grape | cytosol | 60.96 | 21.15 |
| GSMUA_Achr8P34380_001 | Banana | cytosol | 60.96 | 15.68 |
| Zm00001d022246_P001 | Maize | cytosol | 35.83 | 12.88 |
| Zm00001d010225_P001 | Maize | plasma membrane | 28.88 | 10.51 |
| Zm00001d000431_P001 | Maize | plastid | 24.06 | 9.26 |
| Zm00001d013056_P001 | Maize | nucleus | 27.81 | 7.93 |
| Zm00001d023501_P001 | Maize | nucleus | 25.13 | 7.79 |
| Zm00001d006113_P001 | Maize | nucleus | 32.62 | 7.73 |
| Zm00001d032317_P001 | Maize | nucleus | 19.79 | 7.57 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 31.02 | 7.53 |
| Zm00001d044208_P001 | Maize | plastid | 22.46 | 7.17 |
| Zm00001d044203_P001 | Maize | plasma membrane | 21.39 | 7.14 |
| Zm00001d039746_P001 | Maize | nucleus | 25.67 | 6.62 |
| Zm00001d050315_P001 | Maize | nucleus | 28.88 | 6.43 |
| Zm00001d003031_P002 | Maize | nucleus | 25.13 | 5.56 |
| Zm00001d006497_P002 | Maize | nucleus | 20.86 | 5.21 |
| Zm00001d018516_P002 | Maize | mitochondrion | 21.93 | 5.01 |
| Zm00001d046097_P001 | Maize | mitochondrion | 22.46 | 4.49 |
| Zm00001d041799_P001 | Maize | cytosol | 5.88 | 4.17 |
| Zm00001d024719_P001 | Maize | nucleus | 7.49 | 4.14 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 4.81 | 2.49 |
| Zm00001d027279_P001 | Maize | nucleus | 1.07 | 0.7 |
Protein Annotations
| EnsemblPlants:Zm00001d048477_P001 | EnsemblPlants:Zm00001d048477_T001 | EnsemblPlantsGene:Zm00001d048477 | Gene3D:3.40.50.300 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0016787 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF78 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:AQL09889.1 | SEG:seg | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000220E6EB | UniProt:K7VHT4 | MapMan:35.1 | : | : |
Description
Putative DEAD-box ATP-dependent RNA helicase family protein
Coordinates
chr9:-:156986135..156987627
Molecular Weight (calculated)
21088.8 Da
IEP (calculated)
10.527
GRAVY (calculated)
-0.474
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMIFVRTCE STRLLALMLR NLGLKAMSIS GQMSQDKRLG ALNRFKAKDC NILIGTDVAS CGLDIQGVDM VINYDIPMNS KDYVHRVGRT ARAGRSGYAV
101: SLVNQYEAQW FVLIEKLLGK KIDHRKVDRD EVMILKGPIS DAKRIALTKL KESGGHKKRG KVGDDDEEVE NHSHSKRPKS FKKSNRR
101: SLVNQYEAQW FVLIEKLLGK KIDHRKVDRD EVMILKGPIS DAKRIALTKL KESGGHKKRG KVGDDDEEVE NHSHSKRPKS FKKSNRR
001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
Arabidopsis Description
RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.