Factsheet for Zm00001d010225_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18259	Sorghum	nucleus	93.58	80.17
Os05t0110500-02	Rice	nucleus	85.02	73.94
TraesCS1D01G031400.1	Wheat	nucleus	81.91	68.79
TraesCS1A01G030500.1	Wheat	nucleus	81.91	68.79
TraesCS1B01G037600.1	Wheat	nucleus	82.3	68.67
HORVU1Hr1G004510.5	Barley	plastid	81.71	63.64
PGSC0003DMT400006153	Potato	nucleus	57.59	55.43
KRH12590	Soybean	nucleus	57.59	54.51
GSMUA_Achr7P18160_001	Banana	nucleus	60.31	53.08
VIT_11s0016g00630.t01	Wine grape	nucleus	60.89	52.17
KRH37539	Soybean	nucleus	54.67	52.13
PGSC0003DMT400006154	Potato	nucleus	60.51	52.09
Solyc07g042270.2.1	Tomato	nucleus	60.31	51.93
Bra004584.1-P	Field mustard	nucleus	58.37	48.86
AT2G40700.1	Thale cress	nucleus	57.59	48.52
CDX79974	Canola	nucleus	58.37	43.6
CDY23886	Canola	plasma membrane	58.37	42.8
Zm00001d048477_P001	Maize	plastid	10.51	28.88
Zm00001d000431_P001	Maize	plastid	24.51	25.93
Zm00001d014787_P001	Maize	nucleus	22.96	25.38
Zm00001d023501_P001	Maize	nucleus	29.77	25.37
Zm00001d013056_P001	Maize	nucleus	31.13	24.39
Zm00001d044203_P001	Maize	plasma membrane	22.96	21.07
Zm00001d024719_P001	Maize	nucleus	13.81	21.01
Zm00001d044208_P001	Maize	plastid	23.15	20.31
Zm00001d027279_P001	Maize	nucleus	11.09	20.0
Zm00001d022246_P001	Maize	cytosol	19.26	19.04
Zm00001d041799_P001	Maize	cytosol	9.14	17.8
Zm00001d039746_P001	Maize	nucleus	24.9	17.66
Zm00001d006497_P002	Maize	nucleus	24.12	16.58
Zm00001d032317_P001	Maize	nucleus	14.59	15.34
Zm00001d018516_P002	Maize	mitochondrion	24.12	15.16
Zm00001d050315_P001	Maize	nucleus	24.71	15.12
Zm00001d021127_P001	Maize	nucleus, plasma membrane	22.57	15.06
Zm00001d006113_P001	Maize	nucleus	22.57	14.7
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	9.34	13.26
Zm00001d003031_P002	Maize	nucleus	21.21	12.88
Zm00001d046097_P001	Maize	mitochondrion	22.18	12.18

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6FPV7	ProteinID:AQK93660.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000842B0F4	EnsemblPlantsGene:Zm00001d010225
EnsemblPlants:Zm00001d010225_P001	EnsemblPlants:Zm00001d010225_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 17

Coordinates

chr8:-:104666103..104672339

Molecular Weight (calculated)

57882.3 Da

IEP (calculated)

10.369

GRAVY (calculated)

-0.408

Length

514 amino acids

Sequence
(BLAST)

001: MSKKVDKMSF QAPTRIQAQA IPVAISGQHM LVKAATGTGK TLAYLAPIVH VLQMREPRVD RTHGTFGISI LIATPGRLLD HLQRTASFSY SNLQWIVFDE
101: ADSILELGFG KAVEDILEHL GSRNGATGQI KNKGGHIRRQ NLLLSATLNE KVNRLAKISL KNPVMIGLDD QSKPSGKSNN VGNNHTSLLS DEDDEILEKQ
201: NDLMEHAVDD FKLPTQLVQR YVKVSCGSRL AVLLMILKSL FERQVSQKVV VFFSTCDSVD FHHTALSQLE WSSGPQRDMD KKQKFLSCKV FRLHGNMEQD
301: DRKKSFLGFG SEKSAILVST DIAARGLDFP KVKYIIQYDS PGEASEYVHR VGRTARIGEK GEALLFMQPI ELDYLKDLEL HGVSLTEYPL QRVLDSFPVN
401: GQKPHKRKQI SLDMHPCIMS LQRSLEGFVA AEDATKKLAR DAFCSWVRAY TAHRGELKKI FMVKKLHLGH VARSFGLKEQ PSLVGRSHQV SLKKRKKEQK
501: RERPAKRRKL PSKK

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.