Factsheet for Zm00001d050315_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80427	Sorghum	nucleus	95.24	93.79
Zm00001d032317_P001	Maize	nucleus	54.05	92.84
Os08t0416100-01	Rice	nucleus	79.88	78.85
TraesCS4D01G337100.1	Wheat	nucleus	76.43	75.44
TraesCS5A01G510500.1	Wheat	nucleus	76.19	75.12
TraesCS4B01G341100.1	Wheat	plastid	76.31	75.06
Solyc10g009070.2.1	Tomato	nucleus	60.71	64.97
GSMUA_Achr9P14580_001	Banana	nucleus	62.98	64.43
KRH64859	Soybean	nucleus	58.93	63.71
KRH09570	Soybean	nucleus	58.45	63.19
HORVU4Hr1G083970.6	Barley	nucleus	62.5	60.14
Bra003691.1-P	Field mustard	cytosol	57.74	56.92
CDX79187	Canola	cytosol	57.38	56.84
CDX68066	Canola	cytosol	57.62	56.81
AT1G77030.1	Thale cress	nucleus	57.02	56.69
Zm00001d014787_P001	Maize	nucleus	16.55	29.89
Zm00001d048477_P001	Maize	plastid	6.43	28.88
Zm00001d000431_P001	Maize	plastid	14.64	25.31
Zm00001d027279_P001	Maize	nucleus	8.45	24.91
Zm00001d022246_P001	Maize	cytosol	15.36	24.81
Zm00001d010225_P001	Maize	plasma membrane	15.12	24.71
Zm00001d024719_P001	Maize	nucleus	9.52	23.67
Zm00001d013056_P001	Maize	nucleus	18.1	23.17
Zm00001d023501_P001	Maize	nucleus	16.31	22.72
Zm00001d044208_P001	Maize	plastid	15.24	21.84
Zm00001d044203_P001	Maize	plasma membrane	14.4	21.61
Zm00001d021127_P001	Maize	nucleus, plasma membrane	19.52	21.3
Zm00001d006113_P001	Maize	nucleus	19.88	21.17
Zm00001d041799_P001	Maize	cytosol	6.31	20.08
Zm00001d006497_P002	Maize	nucleus	17.5	19.65
Zm00001d039746_P001	Maize	nucleus	16.79	19.45
Zm00001d003031_P002	Maize	nucleus	18.45	18.32
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	7.62	17.68
Zm00001d018516_P002	Maize	mitochondrion	15.12	15.53
Zm00001d046097_P001	Maize	mitochondrion	15.95	14.32

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6Q0Y7	ProteinID:AQK52298.1	InterPro:DBP10_C	InterPro:DDX54/DBP10
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PD024971	PFAM:PF00270	PFAM:PF00271
PFAM:PF08147	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01123	SUPFAM:SSF52540	UniParc:UPI0008457305
EnsemblPlantsGene:Zm00001d050315	EnsemblPlants:Zm00001d050315_P001	EnsemblPlants:Zm00001d050315_T001	SEG:seg	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase 29

Coordinates

chr4:-:80625267..80631776

Molecular Weight (calculated)

93614.9 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.577

Length

840 amino acids

Sequence
(BLAST)

001: MARLTPTKSK SSRKPKPSSS SAMGAGAEPD AMSTRRPKRG KSVGGVSKKS KSGGFESMGL CEEVYRGVRH KGYRVPTPIQ RKTMPLILAG VDVAAMARTG
101: SGKTAAFLVP MLQRLRRRDP SAGVRALILS PTRDLAMQTL KFSNQLGKFT DLRTSIIVGG DSMESQFEDL SECPDIIIAT PGRLMHHLND VKDMTLRSVE
201: YVVFDEADSL FSMGFAKHLH DILKKLNDTR QTLLFSATLP SALADFAKAG LRDPHIVRLD LDKKISPDLR MVFFTLRQEE KLAALLYLVR ERISSEEQTI
301: IFVSTKHHVE FLNVLFREEG LEPSLSYGAM DQEARMIHIS KFRARKTMLL IVTDVAARGL DIPLLDNVVN WDFPAKPKLF VHRVGRVARQ GRSGTAYTFV
401: TSEDMPYLLD LHLFLSRPLR PAPTEEELLK DMDGITMKID EAIANGESVY GRFPQTVLDL ASDGLKEVIT GCTELIALEK PCANAFRLYL KTRPMPSKES
501: IKRVKDLPRE GLNPIFRDVL RSDELSALAF SERLKSFRPK QTILEAEGEA AKARNSKGSN QWLDVMKKKR EVHEGIINLV HQKSSEDPRP EVEEVVDISN
601: WEKKEVCGKK RKLQSFRDED YYISSVPQNH HLEAGLSVRD NEGFVENRLD AAVLDLVDDE ASGMQAQKTR YHWMKNKFVK LNAGDRVTAT GKIKTEGGAK
701: IKASATGIYK RWQQKTHKSI NIGGKSGNFA DEGTSSSGGY QRGNKKHFTG HGRRSIPNAN VPSEIRNHEQ MQKGRQQKAM EITRLKNKSA KDGKFQNKFQ
801: KSRQQPDRHG KGRGSGKGTG KGFSKGAGGR GGKGKGKGGR

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.