CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09570	Soybean	nucleus	96.78	96.78
Solyc10g009070.2.1	Tomato	nucleus	74.77	74.01
GSMUA_Achr9P14580_001	Banana	nucleus	71.81	67.97
AT1G77030.1	Thale cress	nucleus	71.94	66.15
CDX79187	Canola	cytosol	69.76	63.92
CDX68066	Canola	cytosol	69.88	63.73
Bra003691.1-P	Field mustard	cytosol	69.63	63.5
Zm00001d032317_P001	Maize	nucleus	37.32	59.3
Zm00001d050315_P001	Maize	nucleus	63.71	58.93
Os08t0416100-01	Rice	nucleus	63.84	58.28
OQU80427	Sorghum	nucleus	63.84	58.15
TraesCS4B01G341100.1	Wheat	plastid	63.32	57.61
TraesCS4D01G337100.1	Wheat	nucleus	62.93	57.46
TraesCS5A01G510500.1	Wheat	nucleus	62.81	57.28
HORVU4Hr1G083970.6	Barley	nucleus	52.51	46.74
KRH65120	Soybean	cytosol	17.5	30.98
KRH48210	Soybean	nucleus	11.58	28.12
KRH62970	Soybean	nucleus	18.15	26.01
KRH54795	Soybean	nucleus	18.15	25.78
KRH37970	Soybean	cytosol	10.55	25.62
KRH37947	Soybean	plastid	18.92	24.96
KRH37539	Soybean	nucleus	16.86	24.3
KRH56711	Soybean	nucleus	17.89	24.3
KRH03838	Soybean	nucleus	17.89	24.17
KRH12590	Soybean	nucleus	16.73	23.94
KRH43700	Soybean	cytosol	18.02	23.89
KRH13749	Soybean	cytosol, plastid	17.89	23.52
KRG97683	Soybean	nucleus	17.25	22.75
KRG98832	Soybean	nucleus	21.75	22.27
KRH46113	Soybean	nucleus	21.62	22.19
KRH73730	Soybean	nucleus	19.69	20.51
KRH31184	Soybean	nucleus	17.25	20.15
KRH14417	Soybean	cytosol, nucleus	13.0	19.13
KRH48208	Soybean	nucleus	18.79	18.02
KRH47920	Soybean	nucleus	16.09	17.78
KRH65117	Soybean	plastid	18.4	17.35
KRH41139	Soybean	nucleus	15.32	16.83
KRH54980	Soybean	nucleus	3.6	15.73
KRH06491	Soybean	nucleus	16.09	15.51
KRH59841	Soybean	nucleus	10.04	14.74

Protein Annotations

EntrezGene:100806274	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001297	InterPro:DBP10_C	InterPro:DDX54/DBP10
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_03G001200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
UniProt:I1JJY8	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH64859	ProteinID:KRH64859
ProteinID:KRH64859.1	InterPro:P-loop_NTPase	PFAM:PD024971	PFAM:PF00270	PFAM:PF00271	PFAM:PF08147
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01123	SUPFAM:SSF52540	UniParc:UPI00023BC324	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:147739..153075

Molecular Weight (calculated)

87828.2 Da

IEP (calculated)

10.452

GRAVY (calculated)

-0.611

Length

777 amino acids

Sequence
(BLAST)

001: MGREATKKKK MNKNAKSGGF ESLGLNPNVF KGIKRKGYKV PTPIQRKTMP LILSGSDVVA MARTGSGKTA AFLVPMLHRL NQHIPQSGVR ALILSPTRDL
101: ALQTLKFTKE LGHFTDLRVS LLVGGDSMEI QFEELAQSPD IIIATPGRLM HHLSEVDDMS LRSVEYVVFD EADCLFGMGF AEQLHQILAQ LGENRQTLLF
201: SATLPSALAE FAKAGLRDPQ LVRLDLETRI SPDLKLAFFT LRQEEKYSAL LYLVREHIGS DQQTLIFVST KHHVEFLNVL FREEGIEPSV CYGDMDQDAR
301: KIHVSRFRAR KTMLLIVTDV AARGIDIPLL DNVINWDFPP KPKIFVHRVG RAARAGRTGT AYSFVTPEDM AYLLDLHLFL SKPIKPAPTE EEFLQDMDGV
401: MSRCEQAMAN RETIYGRFPQ KVIDLVSDRV REIIDTSAEL ELLQRTCKNA FRLYSKTKPL PAKESIRRVK DLPHEGLHPM FMNVLETGEL TALAFSEHLK
501: KFRPKQTILE AEGEAAKSKH QQGPSGQWVD VMKRKRAIHE NIINLVREQQ QSKSNKEKEE IQSEISPSME KGRKARGSKR KPQSFKDEDH YISSIPKNQH
601: MEAGLTVKAN EDFASNRLEA AVLDLVADDG TGIKKQRSMY HWDKRGKKYI KLNNGDRVAA NGKIKTESGA KTKANKTGIY KKWKERSHGR ISLKGTNNDG
701: DSQESTSLAG SYQRGRRNFK GSKKQHSMPN AHVRSEIKDM DQIRKERQTK ANRVSYIKSK STKGKKFGKN GKKRKGK

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.