CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47920	Soybean	nucleus	82.63	94.74
Bra009356.1-P	Field mustard	cytosol	46.9	67.38
Os01t0618500-01	Rice	nucleus	44.79	67.35
VIT_15s0046g01010.t01	Wine grape	plastid	63.15	66.19
Bra028652.1-P	Field mustard	nucleus	44.29	65.99
CDY40740	Canola	cytosol	44.17	65.8
AT5G08620.1	Thale cress	nucleus	45.78	65.54
EES03287	Sorghum	cytosol	45.04	64.71
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	43.05	64.5
TraesCS3A01G222500.1	Wheat	nucleus, plastid	42.68	63.94
Zm00001d044203_P001	Maize	plasma membrane	44.29	63.75
TraesCS3B01G252700.2	Wheat	nucleus	37.72	63.73
TraesCS3D01G230300.1	Wheat	nucleus	42.31	63.38
CDY44780	Canola	mitochondrion	45.16	62.98
TraesCS3A01G222700.1	Wheat	mitochondrion	45.91	62.93
Zm00001d044208_P001	Maize	plastid	45.66	62.8
TraesCS3D01G230400.2	Wheat	mitochondrion	45.78	62.76
TraesCS3B01G252600.1	Wheat	plastid	45.53	62.73
Os01t0618400-01	Rice	nucleus, plasma membrane	46.15	62.63
CDX84428	Canola	mitochondrion	54.84	62.52
EES01082	Sorghum	mitochondrion, plastid	45.29	62.07
CDY41525	Canola	mitochondrion	54.59	61.88
OQU76491	Sorghum	nucleus	50.12	61.59
AT5G63630.2	Thale cress	mitochondrion, plastid	53.97	60.75
Bra038650.1-P	Field mustard	mitochondrion	54.59	59.22
GSMUA_Achr10P...	Banana	mitochondrion	53.85	57.33
Bra009355.1-P	Field mustard	mitochondrion, plastid	53.97	57.09
GSMUA_Achr8P04210_001	Banana	cytosol	50.62	55.14
Solyc01g095740.2.1	Tomato	nucleus	59.06	54.71
PGSC0003DMT400000611	Potato	mitochondrion	57.69	53.39
AT5G08610.1	Thale cress	mitochondrion, plastid	55.58	52.71
Zm00001d046097_P001	Maize	mitochondrion	54.71	47.12
Os06t0526600-01	Rice	mitochondrion	53.23	46.48
TraesCS7D01G328100.1	Wheat	mitochondrion	53.6	45.05
TraesCS7A01G350700.1	Wheat	mitochondrion	53.85	44.83
TraesCS7B01G232200.1	Wheat	mitochondrion	53.72	44.69
KRH41139	Soybean	nucleus	38.46	43.85
KRH59841	Soybean	nucleus	22.08	33.65
CDY21554	Canola	mitochondrion	53.1	31.49
CDX69935	Canola	mitochondrion	53.23	31.11
KRH62970	Soybean	nucleus	20.1	29.89
KRH54795	Soybean	nucleus	19.73	29.07
KRH56711	Soybean	nucleus	20.6	29.02
KRH65120	Soybean	cytosol	15.63	28.7
KRH03838	Soybean	nucleus	20.47	28.7
KRH48210	Soybean	nucleus	11.17	28.12
KRH37970	Soybean	cytosol	11.17	28.12
KRH37539	Soybean	nucleus	16.5	24.68
KRH12590	Soybean	nucleus	16.25	24.13
KRG97683	Soybean	nucleus	17.12	23.43
KRH43700	Soybean	cytosol	15.26	20.99
KRH13749	Soybean	cytosol, plastid	15.26	20.81
KRH31184	Soybean	nucleus	16.87	20.45
KRH73730	Soybean	nucleus	18.61	20.11
KRH46113	Soybean	nucleus	18.86	20.08
KRG98832	Soybean	nucleus	18.86	20.03
KRH37947	Soybean	plastid	14.02	19.19
KRH54980	Soybean	nucleus	4.22	19.1
KRH48208	Soybean	nucleus	17.87	17.78
KRH14417	Soybean	cytosol, nucleus	11.54	17.61
KRH65117	Soybean	plastid	17.12	16.75
KRH09570	Soybean	nucleus	15.51	16.09
KRH64859	Soybean	nucleus	15.51	16.09

Protein Annotations

EntrezGene:100799999	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02009842	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_16G025700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K7MEV8	EnsemblPlants:KRH06491	ProteinID:KRH06491	ProteinID:KRH06491.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233BA83	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:2491022..2497152

Molecular Weight (calculated)

89549.5 Da

IEP (calculated)

10.252

GRAVY (calculated)

-0.658

Length

806 amino acids

Sequence
(BLAST)

001: MPTKLFSQLR LLHPLLPMKP RTLPLLSRAF FFPSSKFLRT APFKVRAFSS RAHSREKLPL RSSKSLVDDE ADLSNWVDDL RSTRTDEMRP ARDSELRSGR
101: TNEFRSGRGN GVRTGRGDGF RSDRGSEVRS GRGNGVRTGR GDRFADSGRG NGVRTGRGDR FADSGRGNGV RTGRGDRFAD SGRGNGVRTG RGDRFADSGR
201: FGSNNDGERE FRPPRNNSDR ASALGKRRGE DLRKGRQSGN ARRKFQPRSD DDDDDEEEEE EIVGGRKLKG SGVGAFLSED QDDDEDEESE GSEEEEILNK
301: SRAALFGQQN GLNRRTTVPT PRPSSPGGGS DSYLSETRFD QCSISPLSLK GVKDAGYEKM TVVQEATLPV ILKGKDVLAK AKTGTGKTVA FLLPSIEVVA
401: KSPPSDRDHR RPPISVLVIC PTRELASQAA AEATKLLKYH PTIGVQVVIG GTRLALEQKR MQANPCQILV ATPGRLRDHT ENTAGFATRL MGVKVLVLDE
501: ADHLLDMGFR KDIEKIIAAV PKQRQTLMFS ATVPEEVRQV CHIALRRDHE FINTVQEGTE ETHSQVRQTH LVAPLDKHFS LLYVLLKDHI ADDVDYKVLV
601: FCTTAMVTRL VAELLGELNL NVREIHSRKP QSYRTRVSEE FRRSKGLILV TSDVSARGVD YPDVTLVIQV GLPADREQYI HRLGRTGRRG KEGQGILLLA
701: PWEDFFLSTV KDLPIEKAPV LPSVDPDTKK KVEKALSHVE MKNKEAAYQA WLGYYNSNKK VGRDKYRLVE LANEFSRSMG LDNPPAIPKL VLGKMGLRNI
801: PGLRAK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.