Subcellular Localization
min:
: max
Winner_takes_all: plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009355.1-P | Field mustard | mitochondrion, plastid | 76.71 | 85.56 |
| AT5G08620.1 | Thale cress | nucleus | 54.12 | 81.71 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 61.06 | 72.49 |
| Os01t0618500-01 | Rice | nucleus | 41.88 | 66.42 |
| HORVU3Hr1G054730.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 40.35 | 63.75 |
| Zm00001d044208_P001 | Maize | plastid | 43.65 | 63.31 |
| EES01082 | Sorghum | mitochondrion, plastid | 43.53 | 62.93 |
| TraesCS3A01G222500.1 | Wheat | nucleus, plastid | 39.76 | 62.83 |
| EES03287 | Sorghum | cytosol | 41.41 | 62.75 |
| TraesCS3B01G252700.2 | Wheat | nucleus | 35.06 | 62.47 |
| TraesCS3D01G230300.1 | Wheat | nucleus | 39.53 | 62.45 |
| VIT_15s0046g01010.t01 | Wine grape | plastid | 56.24 | 62.16 |
| KRH47920 | Soybean | nucleus | 51.29 | 62.02 |
| Os01t0618400-01 | Rice | nucleus, plasma membrane | 43.06 | 61.62 |
| Zm00001d044203_P001 | Maize | plasma membrane | 40.35 | 61.25 |
| TraesCS3D01G230400.2 | Wheat | mitochondrion | 42.0 | 60.71 |
| TraesCS3A01G222700.1 | Wheat | mitochondrion | 41.88 | 60.54 |
| TraesCS3B01G252600.1 | Wheat | plastid | 41.41 | 60.17 |
| OQU76491 | Sorghum | nucleus | 44.82 | 58.08 |
| KRH06491 | Soybean | nucleus | 52.71 | 55.58 |
| GSMUA_Achr10P... | Banana | mitochondrion | 49.18 | 55.22 |
| GSMUA_Achr8P04210_001 | Banana | cytosol | 46.71 | 53.65 |
| Solyc01g095740.2.1 | Tomato | nucleus | 54.24 | 52.99 |
| PGSC0003DMT400000611 | Potato | mitochondrion | 53.65 | 52.35 |
| CDY21554 | Canola | mitochondrion | 75.41 | 47.17 |
| CDX69935 | Canola | mitochondrion | 75.88 | 46.77 |
| Zm00001d046097_P001 | Maize | mitochondrion | 50.24 | 45.62 |
| Os06t0526600-01 | Rice | mitochondrion | 48.59 | 44.75 |
| TraesCS7D01G328100.1 | Wheat | mitochondrion | 50.47 | 44.73 |
| TraesCS7A01G350700.1 | Wheat | mitochondrion | 50.47 | 44.32 |
| TraesCS7B01G232200.1 | Wheat | mitochondrion | 50.12 | 43.96 |
| AT1G63250.1 | Thale cress | mitochondrion | 36.12 | 38.47 |
| AT2G07750.1 | Thale cress | plastid | 35.88 | 36.09 |
| AT5G60990.1 | Thale cress | nucleus | 15.29 | 28.51 |
| AT3G18600.1 | Thale cress | nucleus | 18.59 | 27.82 |
| AT1G16280.1 | Thale cress | nucleus | 14.82 | 25.66 |
| AT5G65900.1 | Thale cress | nucleus | 19.06 | 25.59 |
| AT1G71370.1 | Thale cress | nucleus | 16.24 | 24.73 |
| AT1G71280.1 | Thale cress | nucleus | 12.82 | 23.44 |
| AT5G05450.1 | Thale cress | nucleus | 16.24 | 23.27 |
| AT2G40700.1 | Thale cress | nucleus | 16.47 | 22.95 |
| AT5G54910.1 | Thale cress | nucleus | 16.94 | 19.49 |
| AT4G16630.1 | Thale cress | nucleus | 17.88 | 19.26 |
| AT3G16840.2 | Thale cress | nucleus | 17.53 | 18.02 |
| AT1G77030.1 | Thale cress | nucleus | 14.0 | 14.08 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:830762 | UniProt:A0A178UFQ6 | ProteinID:AED91329.1 | EMBL:AJ010474 |
| ArrayExpress:AT5G08610 | EnsemblPlantsGene:AT5G08610 | RefSeq:AT5G08610 | TAIR:AT5G08610 | RefSeq:AT5G08610-TAIR-G | EnsemblPlants:AT5G08610.1 |
| TAIR:AT5G08610.1 | Unigene:At.32551 | ProteinID:BAB10010.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_196478.2 | ProteinID:OAO92470.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF528 | UniProt:Q9FNM7 |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0000196C57 | SEG:seg |
Description
RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
Coordinates
chr5:+:2790243..2794219
Molecular Weight (calculated)
94191.4 Da
IEP (calculated)
10.060
GRAVY (calculated)
-0.643
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.