Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G71370.1 | Thale cress | nucleus | 95.27 | 79.39 |
| CDX96202 | Canola | cytosol | 35.91 | 60.07 |
| AT5G05450.1 | Thale cress | nucleus | 72.69 | 57.0 |
| Zm00001d027279_P001 | Maize | nucleus | 30.97 | 50.53 |
| Zm00001d024719_P001 | Maize | nucleus | 36.34 | 50.0 |
| VIT_13s0067g01900.t01 | Wine grape | nucleus | 62.8 | 49.08 |
| KRG97683 | Soybean | nucleus | 61.51 | 48.56 |
| Solyc02g078880.2.1 | Tomato | nucleus | 61.72 | 48.32 |
| Zm00001d041799_P001 | Maize | cytosol | 26.02 | 45.83 |
| PGSC0003DMT400057606 | Potato | nucleus | 61.08 | 45.59 |
| KRH31184 | Soybean | nucleus | 60.0 | 41.95 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 58.28 | 41.63 |
| EES00264 | Sorghum | nucleus, plastid | 56.99 | 41.15 |
| TraesCS3B01G116900.1 | Wheat | plastid | 56.77 | 41.06 |
| TraesCS3A01G100100.1 | Wheat | plastid | 56.77 | 40.99 |
| TraesCS3D01G100800.1 | Wheat | plastid | 56.56 | 40.9 |
| Os01t0164500-01 | Rice | plastid | 56.56 | 40.65 |
| HORVU3Hr1G018130.7 | Barley | plastid | 56.99 | 39.14 |
| Zm00001d039746_P001 | Maize | nucleus | 56.77 | 36.41 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 26.88 | 34.53 |
| AT5G60990.1 | Thale cress | nucleus | 22.8 | 23.25 |
| AT3G18600.1 | Thale cress | nucleus | 25.38 | 20.77 |
| AT1G16280.1 | Thale cress | nucleus | 20.43 | 19.35 |
| AT2G40700.1 | Thale cress | nucleus | 24.95 | 19.02 |
| AT5G08620.1 | Thale cress | nucleus | 22.15 | 18.29 |
| AT5G65900.1 | Thale cress | nucleus | 24.09 | 17.69 |
| AT5G54910.1 | Thale cress | nucleus | 25.16 | 15.83 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 23.01 | 14.94 |
| AT4G16630.1 | Thale cress | nucleus | 23.87 | 14.07 |
| AT1G63250.1 | Thale cress | mitochondrion | 23.87 | 13.91 |
| AT1G77030.1 | Thale cress | nucleus | 24.09 | 13.25 |
| AT2G07750.1 | Thale cress | plastid | 23.87 | 13.14 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 23.44 | 12.82 |
| AT3G16840.2 | Thale cress | nucleus | 21.29 | 11.97 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:843469 | ProteinID:AAG51890.1 | ProteinID:AEE35183.1 | ArrayExpress:AT1G71280 |
| EnsemblPlantsGene:AT1G71280 | RefSeq:AT1G71280 | TAIR:AT1G71280 | RefSeq:AT1G71280-TAIR-G | EnsemblPlants:AT1G71280.1 | TAIR:AT1G71280.1 |
| Unigene:At.70351 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008266 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_177284.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF13959 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 |
| UniProt:Q9FVV4 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM01178 | SUPFAM:SSF52540 |
| UniParc:UPI00000A3D2E | SEG:seg | : | : | : | : |
Description
RH55DEAD-box ATP-dependent RNA helicase 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVV4]
Coordinates
chr1:-:26870093..26872152
Molecular Weight (calculated)
52438.7 Da
IEP (calculated)
9.700
GRAVY (calculated)
-0.320
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.