Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G07750.1 | Thale cress | plastid | 94.49 | 89.23 |
| CDY49890 | Canola | mitochondrion | 85.34 | 87.31 |
| Bra027808.1-P | Field mustard | mitochondrion | 85.09 | 86.94 |
| CDY45370 | Canola | mitochondrion | 84.84 | 86.57 |
| GSMUA_Achr3P14380_001 | Banana | cytosol | 39.85 | 71.14 |
| KRH41139 | Soybean | nucleus | 56.39 | 63.65 |
| VIT_02s0025g03950.t01 | Wine grape | mitochondrion | 59.15 | 62.6 |
| VIT_06s0004g07260.t01 | Wine grape | extracellular, vacuole | 11.9 | 59.38 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 56.77 | 56.27 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 56.77 | 56.2 |
| KRH59841 | Soybean | nucleus | 34.84 | 52.55 |
| Os02t0826100-01 | Rice | cytosol | 53.13 | 52.28 |
| EES07789 | Sorghum | mitochondrion | 53.88 | 52.25 |
| Zm00001d018516_P002 | Maize | mitochondrion | 52.63 | 51.34 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 51.75 | 49.05 |
| TraesCS6B01G455000.1 | Wheat | cytosol | 51.5 | 48.75 |
| AT5G08620.1 | Thale cress | nucleus | 34.21 | 48.49 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 45.61 | 47.89 |
| TraesCS6A01G409100.1 | Wheat | cytosol | 51.63 | 46.5 |
| AT5G63630.2 | Thale cress | mitochondrion, plastid | 37.97 | 42.32 |
| AT5G08610.1 | Thale cress | mitochondrion, plastid | 38.47 | 36.12 |
| AT3G18600.1 | Thale cress | nucleus | 18.67 | 26.23 |
| AT5G60990.1 | Thale cress | nucleus | 14.79 | 25.88 |
| AT1G16280.1 | Thale cress | nucleus | 15.79 | 25.66 |
| AT1G71370.1 | Thale cress | nucleus | 16.79 | 24.01 |
| AT5G65900.1 | Thale cress | nucleus | 19.05 | 24.01 |
| AT1G71280.1 | Thale cress | nucleus | 13.91 | 23.87 |
| AT5G05450.1 | Thale cress | nucleus | 16.29 | 21.92 |
| AT2G40700.1 | Thale cress | nucleus | 16.67 | 21.8 |
| AT5G54910.1 | Thale cress | nucleus | 18.17 | 19.62 |
| KRH54980 | Soybean | nucleus | 4.14 | 18.54 |
| AT4G16630.1 | Thale cress | nucleus | 17.29 | 17.49 |
| AT3G16840.2 | Thale cress | nucleus | 17.54 | 16.93 |
| AT1G77030.1 | Thale cress | nucleus | 13.91 | 13.14 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:842631 | UniProt:A0A178W498 | ProteinID:AAG52143.1 | ProteinID:AEE34076.1 |
| ArrayExpress:AT1G63250 | EnsemblPlantsGene:AT1G63250 | RefSeq:AT1G63250 | TAIR:AT1G63250 | RefSeq:AT1G63250-TAIR-G | EnsemblPlants:AT1G63250.1 |
| TAIR:AT1G63250.1 | Unigene:At.36158 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| RefSeq:NP_176514.1 | ProteinID:OAP13297.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF324 |
| UniProt:Q9C8S9 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000A2C10 |
| SEG:seg | : | : | : | : | : |
Description
RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
Coordinates
chr1:-:23463023..23466508
Molecular Weight (calculated)
89595.8 Da
IEP (calculated)
9.887
GRAVY (calculated)
-0.544
Length
798 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.