CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018516_P002	Maize	mitochondrion	92.59	93.15
Os02t0826100-01	Rice	cytosol	78.13	79.28
TraesCS6B01G455000.1	Wheat	cytosol	79.59	77.7
TraesCS6D01G392700.1	Wheat	cytosol	79.34	77.55
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	70.47	76.32
GSMUA_Achr3P14380_001	Banana	cytosol	40.83	75.17
TraesCS6A01G409100.1	Wheat	cytosol	79.22	73.59
KRH41139	Soybean	nucleus	52.98	61.67
VIT_02s0025g03950.t01	Wine grape	mitochondrion	55.29	60.34
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	11.18	57.5
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	54.8	55.96
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	54.68	55.9
CDY45370	Canola	mitochondrion	52.86	55.63
Bra027808.1-P	Field mustard	mitochondrion	52.73	55.57
CDY49890	Canola	mitochondrion	52.49	55.38
AT1G63250.1	Thale cress	mitochondrion	52.25	53.88
KRH59841	Soybean	nucleus	34.39	53.5
AT2G07750.1	Thale cress	plastid	51.88	50.53
EES03287	Sorghum	cytosol	34.26	50.27
EES01082	Sorghum	mitochondrion, plastid	34.99	48.98
OQU76491	Sorghum	nucleus	36.7	46.04
KXG37786	Sorghum	nucleus	15.92	28.92
KXG22990	Sorghum	cytosol	15.43	28.54
OQU93356	Sorghum	cytosol	15.43	27.97
OQU76528	Sorghum	nucleus	18.59	25.54
EER90714	Sorghum	nucleus	19.2	25.36
EER99761	Sorghum	cytosol	14.7	24.1
EES18259	Sorghum	nucleus	17.13	23.5
EES00264	Sorghum	nucleus, plastid	16.89	21.58
EER99450	Sorghum	nucleus	17.38	19.19
KXG35997	Sorghum	nucleus	18.47	19.14
OQU81941	Sorghum	nucleus	17.25	16.86
KRH54980	Soybean	nucleus	3.52	16.29
OQU80427	Sorghum	nucleus	14.95	14.42

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8084443	UniProt:C5XWL9	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EES07789	ProteinID:EES07789	ProteinID:EES07789.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3004G352600	SUPFAM:SSF52540	unigene:Sbi.9639	UniParc:UPI0001A86153
RefSeq:XP_002454813.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:68106586..68110980

Molecular Weight (calculated)

93089.3 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.505

Length

823 amino acids

Sequence
(BLAST)

001: MGGGPRTFPG GLSKWQYRRM HEKLARQKQR GLLRHEKQLY LARLRSEIRA SRLPGAAAEA PPQGEGPTSS RAHIRALADR FRRPGAEDLW NEDDGPLRRA
101: KRPPTGIASG VRHHHQQLDS GKPRGGPSWE DWEDLALGQP RPRKEPLDRG KGPTLAAFNP RREYLTVVAP WCPRWNPGPL RFVGPKRSYS VMTPCSVSWQ
201: PCVDLRPLVA RGLTEVGNGR REAPLPLFNQ ERLYSVAARR FGRKWRPDSS DDDDEGTSAP KRNLRFGKFG ASSEEDSEID ESGDTGAIRR RWSSAALRNC
301: DMKKERRVLK YYEEESNDLA GRIRELREEI RNREVLGTER RRYESRGESL LTSKRFDECG VSPLTVKALT DAGYVHTTVV QEAALPICLE GKDVLVKAKT
401: GTGKSAAFLL PAIESVLNAM KTNTNQRVSP IFVLVLCPTR ELAIQLAAEA NVLLKYHEGI GVQTLIGGTR FKLDQRRLES DPCQILVATP GRLLDHIENK
501: SSFSVRLMRL KLLVLDEADH LLDLGFRKDI EKIVDSLPRQ RQTLLFSATI PKEVRRVSQL VLKRDHVFVD TVGLGAVETP TKVQQSCLVV PHELHFHMVH
601: HLLQEHIDRE VDYKVIVFCT TAMVTEFMYI MLRDLKLNVR EIHSRKPQLF RTRISEEFRG SNRLILVTSD VSTRGVNYPD VTLVIQVGVP PDREHYIHRL
701: GRTGREGKSG KGILLLAPWE QYFLNEIGDL PIEKCPAPDI GQEMKQKVDD SIKIVDMSIK EAAYHAWLGY YNSIADIGRD KTMLADLANR FGASIGLEKP
801: PAIYRKTALK MGLKDVPGIR IRK

Best Arabidopsis Sequence Match ( AT2G07750.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASS PVGLRRLFCS NASRFSFLSP PARRQAEPST NLFHSGLSKR ITSERSLWNR IFSRNMGGGP RTFPGGLNKW QWKRMHEKKA
101: REKENKLLDQ EKQLYEARIR TEIRAKMWGH PDSGEKTAKL KQSHGPMSPK EHIKTLADRF MKAGADDLWN DNDGPVKKFD QGSRSCSDSI DSTPIDVRRL
201: VSATCDSMGK HRVLDSSRRG FSSMSRFKRN ESSCDEGDDV DAKKLDTLSP FSPKFSGTKE KVKSSTSVVG VIRNKGLFGR RKFRKNDSST EEDSDEEGNE
301: GKMIGWMDLR KTGSSASLGN HDIKLTKRVN RNVTDEELYP PLDINRVRED LSKKQSVDNV MEEKQEPHDS IYSAKRFDES CISPLTLKAL SASGIVKMTR
401: VQDATLSECL DGKDALVKAK TGTGKSMAFL LPAIETVLKA MNSGKGVHKV APIFVLILCP TRELASQIAA EGKALLKNHD GIGVQTLIGG TRFRLDQQRL
501: ESEPCQILIA TPGRLLDHIE NKSGLTSRLM ALKLFIVDEA DLLLDLGFKR DVEKIIDCLP RQRQSLLFSA TIPKEVRRVS QLVLKRDHSY IDTIGLGCVE
601: THDKVKQSCI VAPHESHFHL VPHLLKEHIN NMPDYKIIVF CSTGMVTSLM YTLLREMKLN VREIHARKPQ LHRTCVSDEF KESNRLILVT SDVSARGMNY
701: PDVTLVIQVG IPSDREQYIH RLGRTGREGK GGKGLLLIAP WERYFLDELK DLPLEPIPAP DLDSRVKHQV DQSMAKIDTS IKEAAYHAWL GYYNSVRETG
801: RDKTTLAELA NRFCHSIGLE KPPALFRRTA VKMGLKGISG IPIRK

Arabidopsis Description

RH33Putative DEAD-box ATP-dependent RNA helicase 33 [Source:UniProtKB/Swiss-Prot;Acc:O80792]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.