CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010225_P001	Maize	plasma membrane	80.17	93.58
Os05t0110500-02	Rice	nucleus	85.33	86.63
TraesCS1B01G037600.1	Wheat	nucleus	83.5	81.33
TraesCS1A01G030500.1	Wheat	nucleus	82.67	81.05
TraesCS1D01G031400.1	Wheat	nucleus	82.5	80.88
HORVU1Hr1G004510.5	Barley	plastid	82.33	74.85
KRH12590	Soybean	nucleus	59.33	65.56
GSMUA_Achr7P18160_001	Banana	nucleus	62.67	64.38
VIT_11s0016g00630.t01	Wine grape	nucleus	63.17	63.17
KRH37539	Soybean	nucleus	56.67	63.08
PGSC0003DMT400006153	Potato	nucleus	56.0	62.92
PGSC0003DMT400006154	Potato	nucleus	61.33	61.64
Solyc07g042270.2.1	Tomato	nucleus	61.17	61.47
Bra004584.1-P	Field mustard	nucleus	59.67	58.31
AT2G40700.1	Thale cress	nucleus	58.83	57.87
CDX79974	Canola	nucleus	59.67	52.03
CDY23886	Canola	plasma membrane	59.83	51.21
OQU93356	Sorghum	cytosol	23.33	30.84
KXG22990	Sorghum	cytosol	21.83	29.44
EER90714	Sorghum	nucleus	29.83	28.73
OQU76528	Sorghum	nucleus	28.5	28.55
KXG37786	Sorghum	nucleus	20.83	27.59
EER99761	Sorghum	cytosol	20.0	23.9
EES03287	Sorghum	cytosol	22.33	23.89
EES01082	Sorghum	mitochondrion, plastid	22.67	23.13
EES00264	Sorghum	nucleus, plastid	24.5	22.83
OQU76491	Sorghum	nucleus	21.67	19.82
EER99450	Sorghum	nucleus	24.5	19.73
KXG35997	Sorghum	nucleus	23.33	17.63
EES07789	Sorghum	mitochondrion	23.5	17.13
OQU80427	Sorghum	nucleus	24.17	17.0
OQU81941	Sorghum	nucleus	22.33	15.91

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8077129	UniProt:C5YY81	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
EnsemblPlants:EES18259	ProteinID:EES18259	ProteinID:EES18259.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
EnsemblPlantsGene:SORBI_3009G143800	SUPFAM:SSF52540	unigene:Sbi.10699	UniParc:UPI0001A8878D	RefSeq:XP_002439829.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:50122259..50127244

Molecular Weight (calculated)

67672.3 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.336

Length

600 amino acids

Sequence
(BLAST)

001: MSKKLGKLPP PAAAHEEARE ELFASCSFAD LGLHPTLCAH LQDKMSFEAP TRIQAQAIPV AISGQHMLVK AATGTGKTLA YLAPIVHLLQ MREPRVDRTH
101: GTFALVLVPT RELCLQVYGI AQQLVHRFHW IVPGYIMGGE NRAKEKARLR KGISILIATP GRLLDHLQHT ASFVYSNLQW IVFDEADSIL ELGFGKAVED
201: ILEHLGSRNG APGQIKSKGE HIRRQNLLLS ATLNEKVNRL AKISLRNPVM IGLDDQNKPS GKSNNVGNNH TSLLSDDEED EMMGKQNDLV EHAVDDFKLP
301: AQLVQRYVKV SCGSRLVVLL TILKSLFERQ VSQKVVVFFS TCDSVDFHHT VLSQLKWSSD PHLDIDKKQN FLSCKVFRLH GNMEQDDRKK SFLGFGSEKS
401: AILVSTDIAA RGLDFPKVKY IIQYDSPGEA SEYVHRVGRT ARIGEKGEAL LFLQPIELDY LKDLELHGVS LTEYPFQRVL DSFPVNGQKP HKRKLISLDM
501: HPWIMSLQRS LEAFVAAEDA TKKLARDAFC SWVRAYTAHR GELKKIFMVK KLHLGHVARS FGLKEQPSLV GRSHQMQLKK RKKEQKRERP AKRRKLPSKK

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.