CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044203_P001	Maize	plasma membrane	91.44	91.61
Os01t0618500-01	Rice	nucleus	77.36	80.97
TraesCS3B01G252700.2	Wheat	nucleus	68.63	80.71
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	77.36	80.67
TraesCS3D01G230300.1	Wheat	nucleus	76.47	79.74
TraesCS3A01G222500.1	Wheat	nucleus, plastid	76.29	79.55
EES01082	Sorghum	mitochondrion, plastid	78.25	74.66
Bra009356.1-P	Field mustard	cytosol	58.65	58.65
Bra028652.1-P	Field mustard	nucleus	56.51	58.6
CDY40740	Canola	cytosol	56.15	58.23
AT5G08620.1	Thale cress	nucleus	58.11	57.9
CDY44780	Canola	mitochondrion	56.86	55.19
OQU76491	Sorghum	nucleus	60.96	52.13
KRH47920	Soybean	nucleus	64.88	51.78
GSMUA_Achr8P04210_001	Banana	cytosol	66.84	50.68
AT5G63630.2	Thale cress	mitochondrion, plastid	63.46	49.72
CDY41525	Canola	mitochondrion	62.75	49.51
CDX84428	Canola	mitochondrion	62.39	49.51
VIT_15s0046g01010.t01	Wine grape	plastid	65.95	48.11
Bra038650.1-P	Field mustard	mitochondrion	62.75	47.38
Bra009355.1-P	Field mustard	mitochondrion, plastid	62.39	45.93
KRH06491	Soybean	nucleus	64.71	45.04
AT5G08610.1	Thale cress	mitochondrion, plastid	62.75	41.41
Solyc01g095740.2.1	Tomato	nucleus	63.46	40.92
PGSC0003DMT400000611	Potato	mitochondrion	62.92	40.53
EES07789	Sorghum	mitochondrion	50.27	34.26
KXG37786	Sorghum	nucleus	23.17	28.7
OQU93356	Sorghum	cytosol	22.82	28.19
KXG22990	Sorghum	cytosol	21.93	27.64
OQU76528	Sorghum	nucleus	27.81	26.04
CDY21554	Canola	mitochondrion	62.21	25.68
EER90714	Sorghum	nucleus	28.34	25.52
CDX69935	Canola	mitochondrion	62.03	25.24
EER99761	Sorghum	cytosol	22.1	24.7
EES00264	Sorghum	nucleus, plastid	25.67	22.36
EES18259	Sorghum	nucleus	23.89	22.33
EER99450	Sorghum	nucleus	25.13	18.93
KXG35997	Sorghum	nucleus	24.24	17.13
OQU81941	Sorghum	nucleus	25.13	16.75
OQU80427	Sorghum	nucleus	21.57	14.19

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8084836	UniProt:C5XR37	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES03287
ProteinID:EES03287	ProteinID:EES03287.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004176	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008237	GO:GO:0009056	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0010304
GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G222700	SUPFAM:SSF52540	unigene:Sbi.10114	UniParc:UPI0003C72C57
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:55877003..55880659

Molecular Weight (calculated)

61483.5 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.260

Length

561 amino acids

Sequence
(BLAST)

001: MSTSANPKPK RRRRGPPKQC PEYPMVATVG AMVAHEVGAE GPRRDARQGP AFPRVVTTTA RGGRGAGEQG AGGVEGSASN ADKSAHEAGG VDGTYLTETR
101: FDQCAISPLS LKAIKDAGYE RMTQVQEATL PIILQGKDVL AKAKTGTGKT VAFLLPAIEV LSALPRSTSI NLLVMCPTRE LANQVAAEAR KLLKYHRSLG
201: VQVVIGGTRL PQEQRSMQAN PCQILVATPG RLKDHLENTP GFSTRIKGVK VLVLDEADRL LDMGFRRDIE KIISFIPKER QTLLFSATVS EEVRQISHLA
301: MKRDYNFINT VQEGDEETHA QVNQTYMIAP LDLHFPILYD VLKKHVAEDA EYKVIVFCTT AMVTKLVAEV LSQLKLNIRE IHSRKSQSAR TKVSDEFRKS
401: KGLILVSSDV SARGVDYPDV TLVMQVGLPA DREQYIHRLG RTGRKGKEGQ GILLLAPWEM HFLSIVNDLS ISEAATPSID SSIQAAVKDA VRRVEMKSKE
501: SAYQAWLGYY NSNKAIGRDK ARLVRLAEEF SQSMGLAVPP AIPKLILRKM GLSNVPGLRS S

Best Arabidopsis Sequence Match ( AT5G63630.1 )
(BLAST)

001: MGDIGDLLSE DDEEEDQDYD FLKKKAVSAF GFDKENVIEA DKTRNANDSY LTKTRFDHYP LSPLSLKAIK DAGYETMTVV QEATLPIILK GKDVLAKAKT
101: GTGKTVAFLL PSIEVVVKSP PTSPDNKRPP ILALVICPTR ELANQAATEA NTLLKYHPSI GVQVVIGGTR LGLEQKRMQT NPCQILVATP GRLKDHIENT
201: PGFATRLKGV KVLVLDEADH LLDMGFRKDI ERIISAVPKE RQTFLFSATV PEEVRQICLV ALRRDHEFVN CVHEGTIETH QQVRQMHMIA SLDRHFSLLY
301: TLLREHIMGN VDYKVIVFCT TAMVTKLVAD LLGELNLNVR EIHSRKPQSY RTRVSNEFRK SKGLILVTSD VSARGVDYPD VTLVLQVGLP KDREQYIHRL
401: GRTGRKGKEG EGILLLAPWE EYFLSSLKDL PITKSPLPSI DPETVKKVQK ALCHVEMRNK EAAYQAWLGY YNSQKMIGRD KDRLVELANE FSRSMGLDNP
501: PAIPKLILGK MGLKNVPGLR AK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.