CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021127_P001	Maize	nucleus, plasma membrane	92.19	95.06
Zm00001d006113_P001	Maize	nucleus	92.44	93.03
Os12t0481100-01	Rice	nucleus	81.74	80.92
TraesCS5D01G385400.1	Wheat	nucleus	78.84	80.46
TraesCS5B01G378100.1	Wheat	nucleus	78.84	80.36
TraesCS5A01G375900.1	Wheat	nucleus	78.59	80.21
HORVU5Hr1G093160.3	Barley	nucleus	78.84	75.33
GSMUA_Achr8P12970_001	Banana	nucleus	69.02	71.54
KRH37970	Soybean	cytosol	28.46	70.62
KRH37947	Soybean	plastid	51.01	68.76
VIT_18s0001g14540.t01	Wine grape	nucleus	62.85	68.17
KRH46113	Soybean	nucleus	64.11	67.24
Solyc04g081580.2.1	Tomato	nucleus	62.85	67.07
PGSC0003DMT400025551	Potato	nucleus	62.59	66.71
KRG98832	Soybean	nucleus	63.6	66.53
AT4G16630.1	Thale cress	nucleus	59.7	60.08
CDY40519	Canola	nucleus	56.93	59.63
CDY50846	Canola	nucleus	59.32	56.14
CDY53643	Canola	nucleus	59.57	56.04
Bra040743.1-P	Field mustard	nucleus	59.7	54.23
Bra038492.1-P	Field mustard	nucleus	54.91	48.02
CDY32273	Canola	nucleus	54.91	47.75
OQU93356	Sorghum	cytosol	19.27	33.7
KXG22990	Sorghum	cytosol	17.51	31.24
EER99761	Sorghum	cytosol	19.65	31.08
EES03287	Sorghum	cytosol	17.13	24.24
EES01082	Sorghum	mitochondrion, plastid	17.88	24.15
EER90714	Sorghum	nucleus	18.77	23.92
EES18259	Sorghum	nucleus	17.63	23.33
KXG37786	Sorghum	nucleus	13.22	23.18
EES00264	Sorghum	nucleus, plastid	18.77	23.14
OQU76528	Sorghum	nucleus	17.0	22.54
OQU76491	Sorghum	nucleus	17.76	21.49
OQU80427	Sorghum	nucleus	20.78	19.34
EER99450	Sorghum	nucleus	18.01	19.19
OQU81941	Sorghum	nucleus	20.03	18.88
EES07789	Sorghum	mitochondrion	19.14	18.47

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QDK7	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:KXG35997	ProteinID:KXG35997	ProteinID:KXG35997.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3002G262100	SUPFAM:SSF52540
UniParc:UPI00081AE19C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:64721213..64732381

Molecular Weight (calculated)

88105.8 Da

IEP (calculated)

5.475

GRAVY (calculated)

-0.702

Length

794 amino acids

Sequence
(BLAST)

001: MDPSFRFDPD SSDDEAAGAP ARGGPAQSPW EFSSYAESVA AEHARRRTTS IDEKISHLRQ GRGKPVLSDD SESDVSGSGE DDSSDDEAIE GESGDEEDEL
101: EESEDEEGVD GGSDVEEDIE GSGDEEASGD REGDEDGSDE EGGSELGEEE DAHEEEDMAE QNDTSGPVDP SKFFASSEGA SFHANSFLEL NLSRPLVRAC
201: EALGYQKPTP IQAACIPLAL TGRDICGSAI TGSGKTAAFS LPVLERLLFR PKRVPAIRVL ILTPTRELAA QVHSMIEKLA QFTDIRCCLI VGGLSTKVQE
301: VALRSMPDIV VATPGRIIDH LRNSLSVGLE DLAVVILDEA DRLLELGFSA EIQELIRMCP KRRQTMLFSA TMTEEIDELI KLSLNKPVRL EADPSLKRPA
401: TLTEEVVRIR RARESNQEAV LLALCLKTFK RSVIIFSGTK QSAHRLKIVF GLSGMKAAEL HGNLTQAQRL EALELFKKQE VDFLIATDVA ARGIDIVGVR
501: TVINFACPRD VKTYLHRVGR TARAGREGYA VTFVTDDDRS LLKAIAKKAG SQLKSRIVAE KPVAECAQLI EQLEGQISII IREERVEREA RKAEMEIAKA
601: ENMIAHKDEI YSRPKRTWFA TEREKKLLAA AAKESLDQGK STSGVISAKQ AEDLRLKEKK RREHEKNLPR KKRRRLEAQR EMLEDEDEDD EEAKENDRGK
701: KPKKGQSLVD AAYRKAKSLK AASKRGPGAG KGKNEKNARQ HSEKTPSRHE EMRELFENDM SEWKQGRSSK KNNNFAHKKS KNAFKSKARY KRRK

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.