Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025551 | Potato | nucleus | 98.79 | 98.66 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 75.13 | 76.37 |
| KRH37947 | Soybean | plastid | 59.81 | 75.55 |
| KRH37970 | Soybean | cytosol | 32.26 | 75.0 |
| KRH46113 | Soybean | nucleus | 75.54 | 74.24 |
| KRG98832 | Soybean | nucleus | 75.0 | 73.52 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 67.07 | 65.14 |
| AT4G16630.1 | Thale cress | nucleus | 68.28 | 64.39 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 66.53 | 64.29 |
| CDY40519 | Canola | nucleus | 65.19 | 63.98 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 66.53 | 63.62 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 66.53 | 63.54 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 66.4 | 63.5 |
| Os12t0481100-01 | Rice | nucleus | 68.15 | 63.22 |
| KXG35997 | Sorghum | nucleus | 67.07 | 62.85 |
| Zm00001d006113_P001 | Maize | nucleus | 65.19 | 61.47 |
| CDY50846 | Canola | nucleus | 68.28 | 60.55 |
| CDY53643 | Canola | nucleus | 67.88 | 59.83 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 66.53 | 59.57 |
| Bra040743.1-P | Field mustard | nucleus | 68.01 | 57.89 |
| Bra038492.1-P | Field mustard | nucleus | 63.17 | 51.76 |
| CDY32273 | Canola | nucleus | 62.9 | 51.26 |
| Solyc10g007550.2.1 | Tomato | cytosol, nucleus | 20.3 | 34.4 |
| Solyc10g005520.2.1 | Tomato | cytosol | 20.43 | 31.15 |
| Solyc02g078880.2.1 | Tomato | nucleus | 20.83 | 26.09 |
| Solyc03g114370.2.1 | Tomato | nucleus | 19.22 | 25.27 |
| Solyc07g042270.2.1 | Tomato | nucleus | 19.76 | 24.62 |
| Solyc10g009070.2.1 | Tomato | nucleus | 23.12 | 21.91 |
| Solyc09g090740.2.1 | Tomato | nucleus | 22.04 | 20.53 |
| Solyc07g064520.2.1 | Tomato | nucleus | 19.35 | 19.1 |
| Solyc12g056340.1.1 | Tomato | cytosol, nucleus, plastid | 19.76 | 18.26 |
| Solyc01g095740.2.1 | Tomato | nucleus | 20.03 | 17.13 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K4BVN7 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc04g081580.2 | EnsemblPlants:Solyc04g081580.2.1 | UniParc:UPI0002766070 | SEG:seg |
Description
DEAD-box ATP-dependent RNA helicase 28 [Source:Projected from Arabidopsis thaliana (AT4G16630) UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
Coordinates
chr4:+:65525073..65531509
Molecular Weight (calculated)
84021.0 Da
IEP (calculated)
8.371
GRAVY (calculated)
-0.684
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDFSFEQP SDEEVEYEEN DDSEEEEHEV DEDNEDADPK PRTNKKPQSP WDFSSYSESV ADEHSHRRTT SIDFKISKAR QQLSAPIAKP IEEDSDSDDS
101: EPHRQEEYRP DDEDGDDDVD THVEKKPFFA SSEGVTFHAN SFIELHISRP LLRACEALGY SKPTPIQAAC IPLALTGRDI CGSAITGSGK TAAFALPTLE
201: RLLYRPKNRP AIRVLILTPT RELAVQVHSM IGKLAQFMPD IRCCLVVGGL STKVQEAALR TMPDIVVATP GRMIDHLRNS MSVDLDDLAV LILDEADRLL
301: ELGFSAEIRE LVRLCPKRRQ TMLFSATMTE EVDELINLSL NKPLRLSADP STKRPATLTE EVVRIRRMRE GNHEAVLLAL CTKTFTSKVI VFSGTKQAAH
401: RLKIIFGLLG FKAAELHGNL TQAQRLDALE LFRRQEVDFL IATDVAARGL DIIGVQTVIN FACPRDLTSY VHRVGRTARA GREGYAVTFV TDNDRSLLKA
501: IVKRAGSRLK SRIVAEQSIT KWAQVIEQLE DQVSAVMQEE REEMALRKAE MEANKAENMI AHRDEIYSRP KRTWFVTEKE KKLVQKAAKE NAAAKENGSQ
601: SKVMSAEQAE DLKMKEKRKR EREKNLPRKK RRKLEAAREQ LEDEDDLDDG KDKSKKEKSG ISLVDLAYRR AKAVKAVNKA VDAGKIVRKA GNKPKPKSRA
701: SESRTEEMQD IFQNDTSERK QRKPLHAGGK KKSSFKSKSR YKRR
101: EPHRQEEYRP DDEDGDDDVD THVEKKPFFA SSEGVTFHAN SFIELHISRP LLRACEALGY SKPTPIQAAC IPLALTGRDI CGSAITGSGK TAAFALPTLE
201: RLLYRPKNRP AIRVLILTPT RELAVQVHSM IGKLAQFMPD IRCCLVVGGL STKVQEAALR TMPDIVVATP GRMIDHLRNS MSVDLDDLAV LILDEADRLL
301: ELGFSAEIRE LVRLCPKRRQ TMLFSATMTE EVDELINLSL NKPLRLSADP STKRPATLTE EVVRIRRMRE GNHEAVLLAL CTKTFTSKVI VFSGTKQAAH
401: RLKIIFGLLG FKAAELHGNL TQAQRLDALE LFRRQEVDFL IATDVAARGL DIIGVQTVIN FACPRDLTSY VHRVGRTARA GREGYAVTFV TDNDRSLLKA
501: IVKRAGSRLK SRIVAEQSIT KWAQVIEQLE DQVSAVMQEE REEMALRKAE MEANKAENMI AHRDEIYSRP KRTWFVTEKE KKLVQKAAKE NAAAKENGSQ
601: SKVMSAEQAE DLKMKEKRKR EREKNLPRKK RRKLEAAREQ LEDEDDLDDG KDKSKKEKSG ISLVDLAYRR AKAVKAVNKA VDAGKIVRKA GNKPKPKSRA
701: SESRTEEMQD IFQNDTSERK QRKPLHAGGK KKSSFKSKSR YKRR
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.