Factsheet for Solyc09g090740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003801	Potato	nucleus	97.62	97.87
VIT_05s0049g02360.t01	Wine grape	nucleus	70.21	71.19
KRH48208	Soybean	nucleus	69.09	68.15
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	53.07	67.41
KRH65117	Soybean	plastid	64.58	62.62
GSMUA_Achr5P10150_001	Banana	nucleus	56.82	58.96
CDY52719	Canola	nucleus, plastid	60.45	58.26
AT3G16840.2	Thale cress	nucleus	59.82	57.8
CDY34979	Canola	nucleus, plastid	60.08	57.69
OQU81941	Sorghum	nucleus	58.57	55.58
Os04t0510400-01	Rice	nucleus	57.7	55.41
TraesCS2B01G384300.1	Wheat	nucleus	57.82	55.33
TraesCS2D01G363700.1	Wheat	nucleus	57.7	55.14
TraesCS2A01G366700.1	Wheat	nucleus	57.7	54.62
Zm00001d003031_P002	Maize	nucleus	57.7	54.49
HORVU2Hr1G088480.2	Barley	nucleus, plastid	58.07	53.46
Solyc10g007550.2.1	Tomato	cytosol, nucleus	18.02	32.8
Solyc10g005520.2.1	Tomato	cytosol	19.27	31.56
Solyc03g114370.2.1	Tomato	nucleus	16.77	23.67
Solyc07g042270.2.1	Tomato	nucleus	16.9	22.61
Solyc02g078880.2.1	Tomato	nucleus	16.52	22.22
Solyc04g081580.2.1	Tomato	nucleus	20.53	22.04
Solyc10g009070.2.1	Tomato	nucleus	19.02	19.36
Solyc07g064520.2.1	Tomato	nucleus	16.9	17.9
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	17.4	17.27
Solyc01g095740.2.1	Tomato	nucleus	18.27	16.78

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CWA0
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g090740.2	EnsemblPlants:Solyc09g090740.2.1	UniParc:UPI000276AFA1	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 13 [Source:Projected from Arabidopsis thaliana (AT3G16840) UniProtKB/Swiss-Prot;Acc:Q93Y39]

Coordinates

chr9:-:70174224..70183459

Molecular Weight (calculated)

90450.9 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.781

Length

799 amino acids

Sequence
(BLAST)

001: MASQISDKKR TKKTKKRSRV ESEEFERINS LNWNPTLTEK DDAFSFLIGS NELEGGFLCL EEIDESEYNL GIAKSSGGSE EKGKTKPKKQ KVDTKNEELN
101: GEAKGESKEE IEEVEKETKQ KKKKKMKKKK KDKINKDAVN EAEGNEEPPA VTDGNDDQEQ DSVDETEYYA WNELRLHPLL MKSIYALKFK EPTPIQQACI
201: PAGSHQGKDV VGAAETGSGK TLAFGLPILQ RLLEEREKAE RQLPENGELD DKVASAGLLR ALIITPTREL ALQVTDHLKE AAKHSNFRVV PIVGGMSSEK
301: QERLLKTRPE IVVGTPGRLW ELMSGGETHL VELHSLSFFV LDEADRMIEN GHFHELQSIV DMLPMANKST DDDSQKSQNC ETVSSVQRKK RQTFVFSATI
401: ALSADFRKKL KRGSQKSKAN DELNSIETLS ERAGMRADAA IIDLTNASIL ANKLEESFID CRDEDKDGYL YYILSVHGQG RTIVFCTSIA ALRHISSLLR
501: ILGVNVWTLH AQMQQRARLK AIDRFRGHEH GILIATDVAA RGLDIPGVRT VIHYQLPHSA EVYVHRSGRT ARAHSDGCSI ALITPNDTSK FAALCRSFSK
601: DNFQRFPLEM SYMPEVMKRL SLARQIDKIS RKDSQDKAKK NWLERSAELM ELDLEDNDSE EERVNNHKRK KATSAQLTNL QEELKSLLSR PLQPKTFSKR
701: YLAGAGVSPL LQNQLEELAR QKNSNNSGDV KRKKMIVIGQ DCVEPLQALR SAGPETKLNL KDMAEKRRDI TELRRKRRET KKRLREQRRK QKKKLQGKE

Best Arabidopsis Sequence Match ( AT3G16840.1 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.