Factsheet for Os04t0510400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G384300.1	Wheat	nucleus	80.17	79.88
TraesCS2D01G363700.1	Wheat	nucleus	80.17	79.78
TraesCS2A01G366700.1	Wheat	nucleus	80.29	79.15
OQU81941	Sorghum	nucleus	79.81	78.86
Zm00001d003031_P002	Maize	nucleus	78.97	77.66
HORVU2Hr1G088480.2	Barley	nucleus, plastid	80.05	76.73
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	45.43	60.1
VIT_05s0049g02360.t01	Wine grape	nucleus	56.13	59.26
GSMUA_Achr5P10150_001	Banana	nucleus	54.81	59.22
Solyc09g090740.2.1	Tomato	nucleus	55.41	57.7
PGSC0003DMT400003801	Potato	nucleus	55.17	57.59
KRH48208	Soybean	nucleus	54.21	55.68
KRH65117	Soybean	plastid	50.48	50.97
CDY34979	Canola	nucleus, plastid	50.96	50.96
CDY52719	Canola	nucleus, plastid	50.72	50.9
AT3G16840.2	Thale cress	nucleus	49.04	49.33
Os07t0660000-00	Rice	cytosol	16.83	31.46
Os07t0633500-00	Rice	nucleus	14.78	30.52
Os03t0669000-01	Rice	cytosol, nucleus, plastid	16.11	28.39
Os01t0618400-01	Rice	nucleus, plasma membrane	18.15	25.42
Os01t0618500-01	Rice	nucleus	16.35	25.37
Os05t0110500-02	Rice	nucleus	16.11	22.67
Os06t0535100-00	Rice	nucleus	15.14	21.65
Os03t0802700-01	Rice	nucleus	15.14	21.36
Os12t0481100-01	Rice	nucleus	20.55	21.32
Os01t0164500-01	Rice	plastid	15.99	20.56
Os02t0826100-01	Rice	cytosol	16.23	16.65
Os08t0416100-01	Rice	nucleus	16.95	16.57
Os06t0526600-01	Rice	mitochondrion	17.07	15.38
Os07t0517000-01	Rice	nucleus	8.17	12.98

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4336370	UniProt:A3AVH5	EMBL:AK072655	ProteinID:BAF15200.1
ProteinID:BAS90033.1	ProteinID:CAE03369.1	EMBL:CM000141	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlantsGene:Os04g0510400	EnsemblPlants:Os04t0510400-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00001B16D0
RefSeq:XP_015635675.1	SEG:seg	:	:	:	:

Description

RNA helicase 13Similar to RNA helicase (Fragment). (Os04t0510400-01);Similar to DEAD-box ATP-dependent RNA helicase 13. (Os04t0510400-02)

Coordinates

chr4:-:25535365..25541426

Molecular Weight (calculated)

93313.9 Da

IEP (calculated)

9.890

GRAVY (calculated)

-0.682

Length

832 amino acids

Sequence
(BLAST)

001: MAAAPPPPPP PQLQSSDPST PPQETSQVRK GKKSRGAKKP RRAAAAAAAS TSSAGTMVED PFLVLAGGKE GGFLELEEID EADFGIFGGA VEDLGEIDRK
101: AGKDQKKKKR KKRKRGDDDY ALPGDGDLVV ECEEEGEKGE KRVKKKRRSR KKRKVKEMEE KMESKEDVSD DNVEDMQDGN DMEQDNNDGL ILGEDEVYAW
201: RELRLHPLLI TAVRRLGFKE PTPIQKACFP AAAHQGKDVI GAAETGSGKT LAFGLPILQR LLEEQEKAMR LSREDESTQD ENSRESPLRA LILTPTRELA
301: KQVCDHLKEA AKFLRIQVVP IVGGLSMEKQ ERLLKRKPEI VVGTPGRLWE LMSTGNQHLI KLHSLSFFVL DEADRMIERG HFHELQSIIE MLPVTNGSDE
401: QTVGTTPSCE TVPILQIKKR QTFVFSATLA LSANFRKKLK RGLVTAKASA STDLSSIEAL SKQARMKPNA EIVDLTKASI LPEKLEESFI ECSDDDKDAY
501: LYYILSVHGQ GRTIIFCTSI AALRHLSSIL RVLGINVLTN HAQMQQRARM KAVDRFRESE NSILVATDGF ARGMDFDDVR TVIHYQLPHS TDVYIHRSGR
601: TARKSMAGCS IALISPADKA KFYSLCKSLS KENLQQFPVD HAYMPAVMNR LTLARQIDKI TRKNSQENAN KSWLQRNAES MGLLLETSDS EEERVQGHKQ
701: RKATSANLQK LQQDLSELLQ RPLQPKTFSR RYLAGAGVSP LLQKQLEELS KRNVKGSASV NANKGSRFVV IGQDQIEPLQ ALQNSGQEVC VSIDKQREKR
801: RLAENWRRKK QKEKKSTREQ KRKEKRIAKE RD

Best Arabidopsis Sequence Match ( AT3G16840.2 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.