Factsheet for HORVU2Hr1G088480.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G384300.1	Wheat	nucleus	92.86	96.53
TraesCS2D01G363700.1	Wheat	nucleus	92.74	96.29
TraesCS2A01G366700.1	Wheat	nucleus	93.2	95.85
Os04t0510400-01	Rice	nucleus	76.73	80.05
OQU81941	Sorghum	nucleus	75.12	77.43
Zm00001d003031_P002	Maize	nucleus	74.31	76.24
VIT_05s0049g02360.t01	Wine grape	nucleus	55.41	61.04
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	43.78	60.41
GSMUA_Achr5P10150_001	Banana	nucleus	53.11	59.87
PGSC0003DMT400003801	Potato	nucleus	53.46	58.22
Solyc09g090740.2.1	Tomato	nucleus	53.46	58.07
KRH48208	Soybean	nucleus	52.19	55.93
CDY52719	Canola	nucleus, plastid	49.19	51.51
CDY34979	Canola	nucleus, plastid	49.31	51.44
KRH65117	Soybean	plastid	48.5	51.09
AT3G16840.2	Thale cress	nucleus	47.81	50.18
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	15.78	25.46
HORVU6Hr1G020570.1	Barley	plastid	15.9	24.38
HORVU2Hr1G022490.2	Barley	nucleus	13.82	24.34
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	13.48	23.54
HORVU1Hr1G004510.5	Barley	plastid	15.78	20.76
HORVU2Hr1G028120.2	Barley	plastid	11.87	20.72
HORVU3Hr1G018130.7	Barley	plastid	16.13	20.68
HORVU5Hr1G010160.3	Barley	cytosol	14.06	20.27
HORVU5Hr1G093160.3	Barley	nucleus	19.24	20.1
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	15.55	17.76
HORVU4Hr1G083970.6	Barley	nucleus	10.37	10.31

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287IUE3	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU2Hr1G088480	EnsemblPlants:HORVU2Hr1G088480.2
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000B4673A4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:633328062..633335543

Molecular Weight (calculated)

96437.6 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.736

Length

868 amino acids

Sequence
(BLAST)

001: KIEVHTQTLT SSFPSAVAAS ATASSSRRPR FPMADAPEQS SSDPPTPPQE AIQRPKKNKK GRRKKPKKAA AAATAAPSPS GATMVEDPFL VLAGGKEGGF
101: LELEEIDGAD FGIFGSGLED VGATEKKAWN DQKNKKKKKK RKRGDAKRLD ADVGGDGDGD CAGGSVAESE EEGEKGEKKG KRKKRNKKKR KVKDNDSESK
201: EGVADDNVED MQDDIENVEE DNKDEVKLGE DELYAWLELR LHPLLIKAMH RLGFNEPTPI QKACIPAGAH QGKDVIGAAE TGSGKTLAFG LPILQRLLEE
301: REKTTRLHVE DEKEAEGSST GGPLRALILT PTRELAKQVC DHLKEAAKFL GIHVVPIVGG LSMEKQERLL KKKPEIVVGT PGRLWELMSS GNQHLVELHS
401: LSFFVLDEAD RMIERGHFKE VQSIIEMLPL SNSSDEQTVK ATSSCETVAN LQIKKRQTFV FSATLALSAN FRKKLKRGLS TSKASTAEDL SSIEELSKQA
501: GMKPNAEIVD LTNASILPEK LEESFIECSD DDKDANLYYI LSVHGQGRTI VFCTSISALR HISSLLRTLG INVLTNHAQM QQRARMKAVD RFREGENSVL
601: VATDGFARGM DFDNVRTVIH YQLPHSSDVY IHRSGRTARK SLTGCSIALI SPADKAKFYS LCKSFSKENL QQFPVDQAYM PAIMNRLSLA RQIDKISSKN
701: SKENANKSWL QRNAESMGLI LEASDSEEER VRGHKQRKAA SAQLQKLQQD LNALLQHPLQ PKTFSRRYLA GAGISPLLQK QLEELSKRNV NNNSSNDDNK
801: GSRFVIIGQD RVEPLQALQD SGQEICVNMD KQREKRRLAE NWRRKKHEEK KSTREQKRKD RRSAKERD

Best Arabidopsis Sequence Match ( AT3G16840.1 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.