Factsheet for HORVU3Hr1G018130.7

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G116900.1	Wheat	plastid	93.06	97.98
TraesCS3D01G100800.1	Wheat	plastid	92.32	97.2
TraesCS3A01G100100.1	Wheat	plastid	92.02	96.74
Os01t0164500-01	Rice	plastid	76.81	80.37
Zm00001d024719_P001	Maize	nucleus	38.85	77.81
EES00264	Sorghum	nucleus, plastid	73.71	77.48
Zm00001d027279_P001	Maize	nucleus	32.35	76.84
Zm00001d041799_P001	Maize	cytosol	28.07	71.97
Zm00001d039746_P001	Maize	nucleus	74.45	69.52
VIT_13s0067g01900.t01	Wine grape	nucleus	58.35	66.39
KRG97683	Soybean	nucleus	56.87	65.36
GSMUA_Achr8P01870_001	Banana	cytosol	62.04	64.52
AT5G05450.1	Thale cress	nucleus	55.24	63.07
Bra028757.1-P	Field mustard	nucleus	54.51	62.12
Solyc02g078880.2.1	Tomato	nucleus	54.51	62.12
Bra009114.1-P	Field mustard	nucleus	53.91	61.34
KRH31184	Soybean	nucleus	57.75	58.8
PGSC0003DMT400057606	Potato	nucleus	53.77	58.43
AT1G71370.1	Thale cress	nucleus	47.86	58.06
AT1G71280.1	Thale cress	nucleus	39.14	56.99
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	28.51	53.31
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	21.57	29.38
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	21.27	26.77
HORVU5Hr1G010160.3	Barley	cytosol	22.9	25.75
HORVU2Hr1G022490.2	Barley	nucleus	18.17	24.95
HORVU1Hr1G004510.5	Barley	plastid	23.49	24.09
HORVU6Hr1G020570.1	Barley	plastid	18.61	22.26
CDX69933	Canola	cytosol	4.43	22.06
HORVU5Hr1G093160.3	Barley	nucleus	22.16	18.05
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	19.2	17.11
HORVU2Hr1G028120.2	Barley	plastid	12.41	16.9
HORVU2Hr1G088480.2	Barley	nucleus, plastid	20.68	16.13
HORVU4Hr1G083970.6	Barley	nucleus	14.48	11.23

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287KAS1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G018130	EnsemblPlants:HORVU3Hr1G018130.7	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000B464BF0	SEG:seg	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A287KAS1]

Coordinates

chrchr3H:-:47009455..47013097

Molecular Weight (calculated)

75601.0 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.317

Length

677 amino acids

Sequence
(BLAST)

001: NAALTMASSS SPSPATAAAR KRALTEQRFS DLTPALSPEV VEALDRGGFR RCTPVQAATI PLLLSHKDVA VDAATGSGKT LAFVVPVVEM LRRLPSPPKP
101: HQVLGIIISP TRELSSQIYN VAQPFFATLK GVSSILLVGG LDIRVELEKV EKEGANILVG TPGKLFDIME RLDTLEYKHL EILILDEADR LLDMGFQKQV
201: TSIISKLPKL RRTGLFSATQ TEAVEELAKA GLRNPVRVQV KIEANDAAQQ DLGPSKTPLG LRLEYMICEP AKKSSQLVDF LVQNTGKKIM VYFATCACVD
301: YWSVVLPMLN LLKGSPVIAY HGKMKQGPRE KALASFSSLS SGILVCTDVA ARGLDIPHVD LIVQVTLYCY GLTLLNYFFT FSNQLQIVYS VFQYDPPQDP
401: NVFVHRAGRT ARYDQEGDAI VFLLPTEDAY VDFLKLRGVP LMERVCSPDI VDIVPQIRAA ALEDRNIMEK GLRAFVSFVR SYKEHHCSFI FRWKGLEVGK
501: LAMEYGLLQI PSMPEVKHNN LSLKGFFPLG NIDFSQIKFK DKIREKQRQK ALKRKAEELA NEPPVPEKRI PRERPDKPKR KQTGKQRQTI QTKEDMDELT
601: NEYRLLKKLK RGVIDEDEYE KLTGFGGSDG EGSDGDAAGK GKGKERRSKE QKKLKQRGGK TGGRRFEIKS KLKSKRR

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.