Factsheet for HORVU5Hr1G010160.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G042300.1	Wheat	nucleus	89.37	93.4
TraesCS5D01G050600.1	Wheat	nucleus	85.22	91.77
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	68.77	83.3
OQU76528	Sorghum	nucleus	76.58	76.96
Zm00001d023501_P001	Maize	nucleus	73.92	73.8
Os06t0535100-00	Rice	nucleus	66.11	68.38
GSMUA_Achr10P...	Banana	cytosol	56.98	66.34
VIT_17s0000g04310.t01	Wine grape	cytosol	53.99	59.09
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	53.99	58.24
Solyc03g114370.2.1	Tomato	nucleus	54.32	57.77
KRH62970	Soybean	nucleus	51.99	57.75
PGSC0003DMT400063252	Potato	nucleus	53.65	57.07
KRH54795	Soybean	nucleus	51.83	57.04
KRH56711	Soybean	nucleus	52.99	55.77
KRH03838	Soybean	nucleus	53.16	55.65
CDX92251	Canola	nucleus	50.33	53.25
Bra037574.1-P	Field mustard	nucleus	50.0	53.18
Bra022336.1-P	Field mustard	nucleus	50.17	53.17
CDY18530	Canola	nucleus	50.0	52.99
CDX99342	Canola	nucleus	49.83	52.82
CDX95512	Canola	nucleus	50.0	52.81
CDX82336	Canola	nucleus	49.83	52.36
AT3G18600.1	Thale cress	nucleus	49.0	51.94
CDX75974	Canola	nucleus	50.17	51.89
Bra001713.1-P	Field mustard	nucleus	49.83	49.51
CDY36514	Canola	nucleus	47.67	49.23
Bra024428.1-P	Field mustard	nucleus	47.84	48.73
CDY08740	Canola	nucleus	47.84	48.48
AT5G65900.1	Thale cress	nucleus	47.51	45.18
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.25	28.25
HORVU1Hr1G004510.5	Barley	plastid	28.41	25.91
HORVU2Hr1G022490.2	Barley	nucleus	20.6	25.15
HORVU6Hr1G020570.1	Barley	plastid	21.59	22.97
HORVU3Hr1G018130.7	Barley	plastid	25.75	22.9
HORVU2Hr1G028120.2	Barley	plastid	16.78	20.32
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	24.58	19.47
HORVU5Hr1G093160.3	Barley	nucleus	24.09	17.45
HORVU2Hr1G088480.2	Barley	nucleus, plastid	20.27	14.06
HORVU4Hr1G083970.6	Barley	nucleus	17.28	11.91

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287QC25	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU5Hr1G010160	EnsemblPlants:HORVU5Hr1G010160.3	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI000B488EF7	SEG:seg	:	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A287QC25]

Coordinates

chrchr5H:-:25272656..25274464

Molecular Weight (calculated)

68095.1 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.499

Length

602 amino acids

Sequence
(BLAST)

001: RSHHPVPDPK TRSKASAGAA MYVSPCSLSA EPSENPVALP ESIHHDVCDL EEGIQGKEKG RREEEKEEEN VMEEIGKEGK RKRKEEKGKK EKKRHKGKAG
101: GILTNKLFSE LDISELTAKA VREMNYTHLT QIQARSIPHL MLGSDVLGSA RTGSGKTLAF LIPAIELLHK ARFTPTNGTG VIVVCPTREL AMQTHNVAKE
201: LMKYHLQTLG YVIGGTNIRS EANQLVEGVN LLIATPGRLL DHLRSTTGFN YRGLQCLVID EADRILEQNF EEDMKQIFKH LPRDRQTVLF SATQTKRVED
301: FANLTFGRNE ERQRKLVYVG VDDSELKPTV EGLQQGYCVI PSEERFLVLY AFLRRMQLKQ KVKVMVFFSS CSSVKFHAEL LNFLGIECYD IHGQLKQQKR
401: TTTFFRFSKE EKGILLCTNV AARGLDIPDV DYIVQFDPPD DPKDYIHRVG RTARGDKGKG RALLFLLPEE MKLLIYLRVS NISLTEYTFS GKHVPKLQPQ
501: LEKIVAENYF LKQSAKEAYR SYLLAYNSHS MKDIFGVHQL DLKNVATSFC FNSPPKVNLN LESSASKHRK MRKVDGGKGH GISHSSPYGR SGGIDRRQFA
601: RF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.