Factsheet for AT3G18600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99342	Canola	nucleus	86.62	86.62
CDX92251	Canola	nucleus	86.44	86.29
Bra022336.1-P	Field mustard	nucleus	86.27	86.27
CDX82336	Canola	nucleus	86.44	85.69
Bra037574.1-P	Field mustard	nucleus	85.21	85.51
CDX95512	Canola	nucleus	85.74	85.44
CDY18530	Canola	nucleus	85.21	85.21
CDX75974	Canola	nucleus	85.92	83.85
Bra001713.1-P	Field mustard	nucleus	86.44	81.02
PGSC0003DMT400063252	Potato	nucleus	65.85	66.08
Solyc03g114370.2.1	Tomato	nucleus	65.14	65.37
VIT_17s0000g04310.t01	Wine grape	cytosol	62.32	64.36
KRH62970	Soybean	nucleus	61.27	64.21
GSMUA_Achr10P...	Banana	cytosol	57.92	63.64
KRH54795	Soybean	nucleus	60.21	62.52
KRH03838	Soybean	nucleus	61.97	61.22
KRH56711	Soybean	nucleus	60.92	60.49
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	48.77	55.73
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	54.4	55.38
TraesCS5A01G114200.1	Wheat	nucleus	55.46	54.31
TraesCS6D01G292400.1	Wheat	nucleus	52.82	54.25
TraesCS5B01G120400.1	Wheat	nucleus	55.28	54.14
TraesCS5D01G127000.1	Wheat	nucleus	55.28	54.14
Os03t0802700-01	Rice	nucleus	55.99	53.9
TraesCS6A01G312900.1	Wheat	nucleus	52.29	53.71
EER90714	Sorghum	nucleus	58.8	53.61
TraesCS6B01G342900.1	Wheat	nucleus	51.41	53.48
AT5G65900.1	Thale cress	nucleus	58.8	52.76
TraesCS5A01G042300.1	Wheat	nucleus	52.64	51.91
TraesCS6A01G356000.1	Wheat	nucleus	51.41	50.96
TraesCS5D01G050600.1	Wheat	nucleus	50.0	50.8
OQU76528	Sorghum	nucleus	53.35	50.58
Zm00001d013056_P001	Maize	nucleus	57.75	50.0
Os06t0535100-00	Rice	nucleus	51.23	50.0
Zm00001d000431_P001	Maize	plastid	42.08	49.18
HORVU5Hr1G010160.3	Barley	cytosol	51.94	49.0
Zm00001d023501_P001	Maize	nucleus	51.76	48.76
KXG37786	Sorghum	nucleus	38.73	48.57
TraesCS7A01G313300.1	Wheat	nucleus	23.94	44.01
TraesCS7B01G213800.1	Wheat	nucleus	23.77	43.69
TraesCS7D01G309800.1	Wheat	nucleus	23.77	43.27
AT5G60990.1	Thale cress	nucleus	26.41	32.89
AT2G40700.1	Thale cress	nucleus	32.92	30.66
AT1G16280.1	Thale cress	nucleus	23.77	27.49
AT1G71370.1	Thale cress	nucleus	26.06	26.52
AT5G54910.1	Thale cress	nucleus	34.51	26.52
AT5G08620.1	Thale cress	nucleus	26.23	26.47
AT5G05450.1	Thale cress	nucleus	27.11	25.97
AT1G71280.1	Thale cress	nucleus	20.77	25.38
AT5G63630.2	Thale cress	mitochondrion, plastid	27.11	21.51
AT1G63250.1	Thale cress	mitochondrion	26.23	18.67
AT5G08610.1	Thale cress	mitochondrion, plastid	27.82	18.59
AT2G07750.1	Thale cress	plastid	26.76	17.99
AT4G16630.1	Thale cress	nucleus	24.47	17.62
AT1G77030.1	Thale cress	nucleus	24.82	16.69
AT3G16840.2	Thale cress	nucleus	23.42	16.08

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:821391	UniProt:A0A178V8H1	ProteinID:AEE76121.1	ArrayExpress:AT3G18600
EnsemblPlantsGene:AT3G18600	RefSeq:AT3G18600	TAIR:AT3G18600	RefSeq:AT3G18600-TAIR-G	EnsemblPlants:AT3G18600.1	TAIR:AT3G18600.1
EMBL:AY070052	EMBL:AY096431	Unigene:At.28418	ProteinID:BAB02218.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_188490.1	ProteinID:OAP02590.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	UniProt:Q9LIH9	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI00000A43DE	SEG:seg	:

Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]

Coordinates

chr3:-:6399532..6403392

Molecular Weight (calculated)

63820.1 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.482

Length

568 amino acids

Sequence
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.