CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000431_P001	Maize	plastid	83.66	77.98
OQU76528	Sorghum	nucleus	68.21	51.59
Os06t0535100-00	Rice	nucleus	62.91	48.97
EER90714	Sorghum	nucleus	63.58	46.23
GSMUA_Achr10P...	Banana	cytosol	52.1	45.65
Solyc03g114370.2.1	Tomato	nucleus	52.32	41.87
VIT_17s0000g04310.t01	Wine grape	cytosol	50.77	41.82
PGSC0003DMT400063252	Potato	nucleus	52.1	41.7
KRH62970	Soybean	nucleus	49.67	41.51
KRH54795	Soybean	nucleus	49.45	40.95
Bra022336.1-P	Field mustard	nucleus	50.99	40.67
CDX99342	Canola	nucleus	50.55	40.32
CDX92251	Canola	nucleus	50.55	40.25
KRH56711	Soybean	nucleus	50.77	40.21
KRH03838	Soybean	nucleus	50.99	40.17
CDY18530	Canola	nucleus	50.33	40.14
Bra037574.1-P	Field mustard	nucleus	50.11	40.11
CDX95512	Canola	nucleus	50.33	40.0
CDX82336	Canola	nucleus	50.11	39.62
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	48.34	39.25
CDX75974	Canola	nucleus	50.33	39.18
AT3G18600.1	Thale cress	nucleus	48.57	38.73
CDY36514	Canola	nucleus	48.34	37.56
Bra024428.1-P	Field mustard	nucleus	48.79	37.39
Bra001713.1-P	Field mustard	nucleus	49.89	37.29
CDY08740	Canola	nucleus	48.79	37.21
AT5G65900.1	Thale cress	nucleus	48.57	34.76
KXG22990	Sorghum	cytosol	25.17	25.62
OQU93356	Sorghum	cytosol	25.39	25.33
EES03287	Sorghum	cytosol	28.7	23.17
EES01082	Sorghum	mitochondrion, plastid	29.14	22.45
EER99761	Sorghum	cytosol	24.5	22.11
EES18259	Sorghum	nucleus	27.59	20.83
OQU76491	Sorghum	nucleus	28.48	19.66
EES00264	Sorghum	nucleus, plastid	27.81	19.57
EER99450	Sorghum	nucleus	28.04	17.05
EES07789	Sorghum	mitochondrion	28.92	15.92
KXG35997	Sorghum	nucleus	23.18	13.22
OQU81941	Sorghum	nucleus	23.62	12.71
OQU80427	Sorghum	nucleus	23.4	12.43

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QIP5	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG37786
ProteinID:KXG37786	ProteinID:KXG37786.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G126400	SUPFAM:SSF52540	UniParc:UPI00081AC776
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:9941318..9944719

Molecular Weight (calculated)

51779.1 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.424

Length

453 amino acids

Sequence
(BLAST)

001: MAARALPESV HHTACDELQK DDRKEEKGKR KREREEDIGM EATGKEKMEG MGKKKEKNGE EKLKKGKGGG ILTNRLFSEL CISELTAKAI REMNYTHLTK
101: IQARSIPHLM EGSDVMGSAK TGSGKTLAFL IPAIELLHRS HFLPRNGTGV VVVCPTRELA IQTHNVAKEL MKYHSQTLGY VIGGTNMRSE ANQLAEGINV
201: LVATPGMLLD HLRSTSSFKY KELKCLIIDE ADRILEQNFE EDMKQIFKRL PRDRQTVLFS ATQTQKVQDF ANFTFGKNEE RQRKLVYVGV DDSELKPTVE
301: GLQQAYCVIP SEKRFLVLYT FLRLKVHKEQ MVEVLRGEVG EEQKVKIMVF FSSCSSVKFH AELLNFLGIE CYEIHGQLKQ QKRTSTFFRF LKEEKGILLC
401: PNVAARGLDI PDVDYLCNMI LQMTQRITFT ELVVLPEVIK AKERHYCSYY RKN

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.