CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022246_P001	Maize	cytosol	90.64	87.5
TraesCS2A01G154800.1	Wheat	cytosol	78.88	77.65
TraesCS2B01G179900.1	Wheat	cytosol	78.69	77.3
TraesCS2D01G160100.1	Wheat	cytosol	78.49	77.25
Os07t0633500-00	Rice	nucleus	61.95	77.17
VIT_19s0085g00510.t01	Wine grape	cytosol	58.17	59.71
HORVU2Hr1G028120.2	Barley	plastid	58.76	59.36
PGSC0003DMT400029241	Potato	cytosol	56.37	58.11
Solyc10g005520.2.1	Tomato	cytosol	56.37	57.99
GSMUA_Achr5P09910_001	Banana	nucleus	51.79	54.85
CDY52844	Canola	cytosol	52.59	54.21
Bra026724.1-P	Field mustard	nucleus	52.39	54.12
CDX81759	Canola	cytosol	52.39	53.89
AT1G16280.1	Thale cress	nucleus	51.59	52.75
KRH43700	Soybean	cytosol	53.78	46.08
KRH13749	Soybean	cytosol, plastid	52.99	45.01
OQU93356	Sorghum	cytosol	37.05	40.97
KXG22990	Sorghum	cytosol	35.46	40.0
KXG37786	Sorghum	nucleus	22.11	24.5
EES03287	Sorghum	cytosol	24.7	22.1
OQU76528	Sorghum	nucleus	26.1	21.87
EER90714	Sorghum	nucleus	27.09	21.83
EES01082	Sorghum	mitochondrion, plastid	24.7	21.09
EES18259	Sorghum	nucleus	23.9	20.0
KXG35997	Sorghum	nucleus	31.08	19.65
EES00264	Sorghum	nucleus, plastid	24.7	19.25
OQU76491	Sorghum	nucleus	24.7	18.9
EER99450	Sorghum	nucleus	25.1	16.91
OQU81941	Sorghum	nucleus	28.09	16.75
OQU80427	Sorghum	nucleus	26.29	15.47
EES07789	Sorghum	mitochondrion	24.1	14.7

Protein Annotations

MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	EntrezGene:8079375	UniProt:C5X389	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EER99761
ProteinID:EER99761	ProteinID:EER99761.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF552
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3002G387500	SUPFAM:SSF52540
UniParc:UPI0001A83FA2	RefSeq:XP_002463240.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:74165722..74169355

Molecular Weight (calculated)

55555.8 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.331

Length

502 amino acids

Sequence
(BLAST)

001: MEVDGGAQPF RLFSNRGKSK PRLKLEPQVQ PQPQPEPEPP SSEPAAAEAD HPPSPTIVTE TSQADDVEAA SGAAPATFAD LGLSQWLVDA CDALGMRRPT
101: AVQRRCIPRA LAGEDVLGIA ETGSGKTAAF ALPILHRLGE DPYGVAALAL APTRELAAQL AEQFRALGAP LGLRCLAAIG GFDSLAQAKG LSRRPHVVVA
201: TPGRIATLVK DDPDLAKVFA RTKFLVLDEA DRVLDVNFEE ELRVIFGCLP KKRQTFLFSA TMSDNLRSLL ELSGNKSYFF EAYEGFKTVE TLKQQYIHVP
301: PQGKELHLWY LLSIMKEKKE DPIRSAIVFV SKCNVCQYLD LLLEELGYPA VALNSHKSQA QRLLALNRFK SGQVPILIST DVGSRGLDIQ TVDLVINYDM
401: PMSPRDYIHR VGRTARASRG GLAISFVTQK DICLLHEIED VVGKQLEAYE CNDKEVTKDI TKVFKARRLA KMRSRDEGHD EKVEARKEQK KRDRARKRKH
501: ED

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.