Factsheet for Zm00001d022246_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99761	Sorghum	cytosol	87.5	90.64
Os07t0633500-00	Rice	nucleus	59.62	76.92
TraesCS2A01G154800.1	Wheat	cytosol	74.81	76.27
TraesCS2B01G179900.1	Wheat	cytosol	74.81	76.13
TraesCS2D01G160100.1	Wheat	cytosol	74.62	76.08
VIT_19s0085g00510.t01	Wine grape	cytosol	55.77	59.3
HORVU2Hr1G028120.2	Barley	plastid	55.38	57.95
PGSC0003DMT400029241	Potato	cytosol	54.23	57.91
Solyc10g005520.2.1	Tomato	cytosol	54.23	57.79
CDY52844	Canola	cytosol	52.31	55.85
Bra026724.1-P	Field mustard	nucleus	52.12	55.76
CDX81759	Canola	cytosol	52.12	55.53
GSMUA_Achr5P09910_001	Banana	nucleus	49.62	54.43
AT1G16280.1	Thale cress	nucleus	51.15	54.18
KRH43700	Soybean	cytosol	52.69	46.76
KRH13749	Soybean	cytosol, plastid	51.92	45.69
Zm00001d014787_P001	Maize	nucleus	34.04	38.06
Zm00001d048477_P001	Maize	plastid	12.88	35.83
Zm00001d024719_P001	Maize	nucleus	16.92	26.04
Zm00001d027279_P001	Maize	nucleus	14.23	25.96
Zm00001d000431_P001	Maize	plastid	24.23	25.93
Zm00001d023501_P001	Maize	nucleus	25.77	22.22
Zm00001d044203_P001	Maize	plasma membrane	23.85	22.14
Zm00001d041799_P001	Maize	cytosol	11.15	21.97
Zm00001d044208_P001	Maize	plastid	23.46	20.82
Zm00001d013056_P001	Maize	nucleus	25.96	20.58
Zm00001d021127_P001	Maize	nucleus, plasma membrane	29.81	20.13
Zm00001d006113_P001	Maize	nucleus	30.19	19.9
Zm00001d010225_P001	Maize	plasma membrane	19.04	19.26
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	12.5	17.96
Zm00001d039746_P001	Maize	nucleus	23.85	17.1
Zm00001d006497_P002	Maize	nucleus	23.27	16.18
Zm00001d003031_P002	Maize	nucleus	25.77	15.84
Zm00001d050315_P001	Maize	nucleus	24.81	15.36
Zm00001d018516_P002	Maize	mitochondrion	24.04	15.28
Zm00001d046097_P001	Maize	mitochondrion	24.62	13.68
Zm00001d032317_P001	Maize	nucleus	10.58	11.25

Protein Annotations

EntrezGene:103633469	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6IKL4	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006364
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009561	GO:GO:0009791
GO:GO:0009987	GO:GO:0016787	GO:GO:0090406	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM59945.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008429B93
EnsemblPlantsGene:Zm00001d022246	EnsemblPlants:Zm00001d022246_P001	EnsemblPlants:Zm00001d022246_T001	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 36

Coordinates

chr7:-:173543861..173547833

Molecular Weight (calculated)

58068.1 Da

IEP (calculated)

8.458

GRAVY (calculated)

-0.247

Length

520 amino acids

Sequence
(BLAST)

001: MEVDGEAQHF RLFSKRAKPK LKPEVQPQPE PEPPSRDPAA AEAYLDPAPT IVTETGQADD AADAAGTAPA TFADLGLSQW LVDACEALGM RRPTAVQRRC
101: IPRALAGADV LGIAETGSGK TAAFALPILH RLGEDPYGVA ALALAPTREL AAQLAEQFRA LGAPLGLRCL AAIGGFDSLA QAKGLSRRPH VVVATPGRIA
201: TLVKNDPDLA KVFSRTKFLV LDEADRILDV NFEEELRVIF GCLPKKRQTF LFSATMSDNL RSLLELSGNK SYFFEAYEGF KTVETLKQQY IHVPPQGKEL
301: HLWHLLSVMK GKTEDPIRSA IVFVSTCKDC QYLDLLLEEL RYPAVALNSH KSQAQRLSAL NRFKSGQVPV LLATDVGSRG LDIQTVDLVI NYDMPMCVYT
401: LYWIYMQYIK IVFLVFTCCR SPRDYIHRVG RTARASRGGL AISFVTQKDI CLLHEIEDVV EKQLEAYECS DKEVTKDITK VFKAIRLSKM RRRDEGHDEK
501: VEARKEQKRR DRARKRKHED

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.