Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027279_P001 | Maize | nucleus | 77.81 | 92.28 |
| Zm00001d041799_P001 | Maize | cytosol | 62.13 | 79.55 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 68.93 | 64.36 |
| EES00264 | Sorghum | nucleus, plastid | 94.38 | 49.53 |
| Zm00001d039746_P001 | Maize | nucleus | 95.56 | 44.55 |
| Os01t0164500-01 | Rice | plastid | 81.95 | 42.81 |
| TraesCS3D01G100800.1 | Wheat | plastid | 78.99 | 41.52 |
| TraesCS3B01G116900.1 | Wheat | plastid | 78.99 | 41.52 |
| TraesCS3A01G100100.1 | Wheat | plastid | 78.7 | 41.3 |
| HORVU3Hr1G018130.7 | Barley | plastid | 77.81 | 38.85 |
| AT1G71280.1 | Thale cress | nucleus | 50.0 | 36.34 |
| KRG97683 | Soybean | nucleus | 63.31 | 36.33 |
| VIT_13s0067g01900.t01 | Wine grape | nucleus | 63.61 | 36.13 |
| Solyc02g078880.2.1 | Tomato | nucleus | 62.13 | 35.35 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 65.68 | 34.1 |
| Bra009114.1-P | Field mustard | nucleus | 59.76 | 33.95 |
| AT5G05450.1 | Thale cress | nucleus | 59.47 | 33.9 |
| Bra028757.1-P | Field mustard | nucleus | 59.47 | 33.84 |
| AT1G71370.1 | Thale cress | nucleus | 55.62 | 33.69 |
| PGSC0003DMT400057606 | Potato | nucleus | 61.54 | 33.39 |
| KRH31184 | Soybean | nucleus | 62.13 | 31.58 |
| Zm00001d014787_P001 | Maize | nucleus | 29.59 | 21.51 |
| Zm00001d000431_P001 | Maize | plastid | 30.18 | 20.99 |
| Zm00001d044203_P001 | Maize | plasma membrane | 28.99 | 17.5 |
| Zm00001d022246_P001 | Maize | cytosol | 26.04 | 16.92 |
| Zm00001d044208_P001 | Maize | plastid | 28.4 | 16.38 |
| Zm00001d023501_P001 | Maize | nucleus | 27.81 | 15.59 |
| Zm00001d013056_P001 | Maize | nucleus | 29.88 | 15.4 |
| Zm00001d010225_P001 | Maize | plasma membrane | 21.01 | 13.81 |
| Zm00001d006497_P002 | Maize | nucleus | 28.4 | 12.83 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 27.51 | 12.08 |
| Zm00001d006113_P001 | Maize | nucleus | 27.81 | 11.91 |
| Zm00001d018516_P002 | Maize | mitochondrion | 28.11 | 11.61 |
| Zm00001d003031_P002 | Maize | nucleus | 27.22 | 10.87 |
| Zm00001d046097_P001 | Maize | mitochondrion | 28.4 | 10.26 |
| Zm00001d050315_P001 | Maize | nucleus | 23.67 | 9.52 |
| Zm00001d048477_P001 | Maize | plastid | 4.14 | 7.49 |
| Zm00001d032317_P001 | Maize | nucleus | 10.36 | 7.16 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:AQK41919.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K7UG30 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI00022162A7 | EnsemblPlantsGene:Zm00001d024719 | EnsemblPlants:Zm00001d024719_P001 |
| EnsemblPlants:Zm00001d024719_T001 | SEG:seg | : | : | : | : |
Description
Putative DEAD-box ATP-dependent RNA helicase family protein
Coordinates
chr10:-:84968157..84970062
Molecular Weight (calculated)
36715.9 Da
IEP (calculated)
8.591
GRAVY (calculated)
0.121
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTAAAAA RKGALTDQRF SELSPTLSPE VVEALDRDGF QRCTPVQAAA IPHLLSHKDV AVDAAIGSGK TLAFIVPVVE ILRHRSSPPK SHEVLALIIS
101: PTRELSSQIF NVAQPFFATL NGVPSMLLVG GLDIKAELKK VEEEGANILV GTPGKLFDIM HTDALEYKNL EILILDEADR LLDMGFQKHI NFILSMLPKL
201: RRTGLFSATQ TKAITNLSKA GLRNAIMVEV KTEAKSTSKD AGQQELGPSI TPLGLRLEYM ICEASNKSSQ LVDFLVQNSG KKIMVYFATC AYVDYWAVVL
301: PLINPLKGSP IIAYHGKMKQ SLREKALASF SALSSCFY
101: PTRELSSQIF NVAQPFFATL NGVPSMLLVG GLDIKAELKK VEEEGANILV GTPGKLFDIM HTDALEYKNL EILILDEADR LLDMGFQKHI NFILSMLPKL
201: RRTGLFSATQ TKAITNLSKA GLRNAIMVEV KTEAKSTSKD AGQQELGPSI TPLGLRLEYM ICEASNKSSQ LVDFLVQNSG KKIMVYFATC AYVDYWAVVL
301: PLINPLKGSP IIAYHGKMKQ SLREKALASF SALSSCFY
001: MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
Arabidopsis Description
RH55DEAD-box ATP-dependent RNA helicase 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.