Factsheet for Zm00001d044208_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01082	Sorghum	mitochondrion, plastid	96.08	95.75
Os01t0618400-01	Rice	nucleus, plasma membrane	83.79	82.66
TraesCS3D01G230400.2	Wheat	mitochondrion	79.35	79.08
TraesCS3A01G222700.1	Wheat	mitochondrion	79.18	78.91
TraesCS3B01G252600.1	Wheat	plastid	78.33	78.46
Zm00001d044203_P001	Maize	plasma membrane	72.53	75.89
Bra009356.1-P	Field mustard	cytosol	57.34	59.89
Bra028652.1-P	Field mustard	nucleus	54.78	59.33
CDY40740	Canola	cytosol	54.44	58.96
AT5G08620.1	Thale cress	nucleus	56.31	58.61
CDY44780	Canola	mitochondrion	55.63	56.4
GSMUA_Achr8P04210_001	Banana	cytosol	67.41	53.38
KRH47920	Soybean	nucleus	62.8	52.35
CDX84428	Canola	mitochondrion	61.26	50.78
CDY41525	Canola	mitochondrion	61.6	50.77
AT5G63630.2	Thale cress	mitochondrion, plastid	61.77	50.56
Bra038650.1-P	Field mustard	mitochondrion	61.6	48.59
VIT_15s0046g01010.t01	Wine grape	plastid	63.65	48.5
Bra009355.1-P	Field mustard	mitochondrion, plastid	61.95	47.64
KRH06491	Soybean	nucleus	62.8	45.66
AT5G08610.1	Thale cress	mitochondrion, plastid	63.31	43.65
Solyc01g095740.2.1	Tomato	nucleus	61.26	41.26
PGSC0003DMT400000611	Potato	mitochondrion	60.58	40.76
Zm00001d046097_P001	Maize	mitochondrion	60.75	38.03
Zm00001d018516_P002	Maize	mitochondrion	48.12	34.47
Zm00001d027279_P001	Maize	nucleus	14.33	29.47
Zm00001d000431_P001	Maize	plastid	24.06	29.01
Zm00001d024719_P001	Maize	nucleus	16.38	28.4
Zm00001d014787_P001	Maize	nucleus	22.18	27.96
Zm00001d023501_P001	Maize	nucleus	27.65	26.87
CDY21554	Canola	mitochondrion	61.43	26.49
CDX69935	Canola	mitochondrion	61.77	26.25
Zm00001d013056_P001	Maize	nucleus	26.96	24.09
Zm00001d041799_P001	Maize	cytosol	10.75	23.86
Zm00001d022246_P001	Maize	cytosol	20.82	23.46
Zm00001d010225_P001	Maize	plasma membrane	20.31	23.15
Zm00001d048477_P001	Maize	plastid	7.17	22.46
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	12.8	20.72
Zm00001d039746_P001	Maize	nucleus	24.4	19.72
Zm00001d021127_P001	Maize	nucleus, plasma membrane	24.91	18.96
Zm00001d006497_P002	Maize	nucleus	23.55	18.45
Zm00001d006113_P001	Maize	nucleus	24.06	17.87
Zm00001d003031_P002	Maize	nucleus	23.72	16.43
Zm00001d050315_P001	Maize	nucleus	21.84	15.24
Zm00001d032317_P001	Maize	nucleus	10.07	12.07

Protein Annotations

EntrezGene:103651490	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6NJK7	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONM40445.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000221D2C0	EnsemblPlantsGene:Zm00001d044208	EnsemblPlants:Zm00001d044208_P001
EnsemblPlants:Zm00001d044208_T001	SEG:seg	:	:	:	:

Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein

Coordinates

chr3:-:221908792..221912374

Molecular Weight (calculated)

64763.7 Da

IEP (calculated)

9.944

GRAVY (calculated)

-0.251

Length

586 amino acids

Sequence
(BLAST)

001: MASGDLLLRA HAGAPVLARA FSCRLLVPAR RRSGLISPLA ASKVGIADVV GRVRSGGADQ KRRRRDAKEG FGFSGVATRR ELIDDEKVEQ DEEDEALKLG
101: VEKNGGETGG VDGSYLSETR FDQCAISPLS MKAVKDAGYE RMTEVQEATL PIILQGKDVL AKAKTGTGKT VAFLLPAIEV LSTLPHQRGQ LRPPINLLVM
201: CPTRELANQV AVEARKLLRY HRTLGVQVVI GGTRLTQEQR SMQANPCQIL VATPGRLKDH LENTPGFSTR LKGVKVLVLD EADRLLDMGF RRDIEKIIAS
301: IPRERQTLLF SATVPEEVRQ ISHVAMKKDY RFINTVKEGD EETHAQVSQM YMVAPLDLHF SILYDVLKKH VAEDADYKVI IFCTTAMVTK LVAEVLSQLK
401: LNIREIHSRK SQSARTKVSD EFRKSKGLIL VSSDVSARGV DYPDVTLVIQ VGVPADREQY IHRLGRTGRK GKEGQGLLLL APWEKYFLGA VKDLSIAESA
501: VPPVDSSVET EVRNAVRKVE MKSKECAYQA WLGYYNSNKT IGRDKSRLVH LAEEFSQSMG LAVPPAIPRN ILRKMGLNNV PGLRSS

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.