CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028652.1-P	Field mustard	nucleus	89.27	95.38
CDY40740	Canola	cytosol	89.1	95.19
AT5G08620.1	Thale cress	nucleus	75.43	77.44
CDX69933	Canola	cytosol	17.82	75.74
Os01t0618500-01	Rice	nucleus	56.06	60.45
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	55.02	59.11
TraesCS3D01G230300.1	Wheat	nucleus	54.84	58.92
TraesCS3A01G222500.1	Wheat	nucleus, plastid	54.84	58.92
TraesCS3B01G252700.2	Wheat	nucleus	48.1	58.28
EES03287	Sorghum	cytosol	55.19	56.86
EES01082	Sorghum	mitochondrion, plastid	56.75	55.78
Zm00001d044203_P001	Maize	plasma membrane	53.98	55.71
Zm00001d044208_P001	Maize	plastid	56.4	55.63
Os01t0618400-01	Rice	nucleus, plasma membrane	57.09	55.56
CDX84428	Canola	mitochondrion	67.47	55.16
CDY41525	Canola	mitochondrion	67.3	54.71
TraesCS3D01G230400.2	Wheat	mitochondrion	55.54	54.59
TraesCS3B01G252600.1	Wheat	plastid	55.19	54.53
TraesCS3A01G222700.1	Wheat	mitochondrion	55.36	54.42
KRH47920	Soybean	nucleus	62.98	51.78
OQU76491	Sorghum	nucleus	57.44	50.61
VIT_15s0046g01010.t01	Wine grape	plastid	65.57	49.28
GSMUA_Achr8P04210_001	Banana	cytosol	59.86	46.76
KRH06491	Soybean	nucleus	62.98	45.16
GSMUA_Achr10P...	Banana	mitochondrion	59.0	45.05
Solyc01g095740.2.1	Tomato	nucleus	63.32	42.07
PGSC0003DMT400000611	Potato	mitochondrion	62.46	41.45
Zm00001d046097_P001	Maize	mitochondrion	58.48	36.11
TraesCS7D01G328100.1	Wheat	mitochondrion	58.13	35.04
Os06t0526600-01	Rice	mitochondrion	55.54	34.78
TraesCS7A01G350700.1	Wheat	mitochondrion	57.79	34.5
TraesCS7B01G232200.1	Wheat	mitochondrion	57.61	34.37
CDY45370	Canola	mitochondrion	45.85	33.89
CDY49890	Canola	mitochondrion	45.5	33.72
CDY21554	Canola	mitochondrion	75.43	32.08
CDX69935	Canola	mitochondrion	75.78	31.76
CDY42845	Canola	cytosol	22.32	28.73
CDY47007	Canola	cytosol	22.32	28.73
CDX92251	Canola	nucleus	26.3	26.71
CDX82336	Canola	nucleus	26.47	26.7
CDX95512	Canola	nucleus	26.3	26.67
CDY18530	Canola	nucleus	26.12	26.58
CDX99342	Canola	nucleus	26.12	26.58
CDX75974	Canola	nucleus	26.3	26.12
CDY36514	Canola	nucleus	25.61	25.39
CDX81759	Canola	cytosol	21.28	25.2
CDY08740	Canola	nucleus	25.61	24.92
CDY52844	Canola	cytosol	20.93	24.85
CDX96202	Canola	cytosol	11.94	24.82
CDX70149	Canola	nucleus	24.39	23.58
CDY14112	Canola	cytosol	23.88	23.23
CDY04952	Canola	nucleus	23.7	23.06
CDX79974	Canola	nucleus	23.88	20.06
CDY23886	Canola	plasma membrane	23.88	19.69
CDY17287	Canola	nucleus	22.15	19.57
CDY40519	Canola	nucleus	23.18	17.68
CDY50846	Canola	nucleus	23.88	16.45
CDY53643	Canola	nucleus	23.88	16.35
CDY52719	Canola	nucleus, plastid	22.66	15.8
CDY34979	Canola	nucleus, plastid	22.66	15.75
CDX79187	Canola	cytosol	20.76	14.15
CDX68066	Canola	cytosol	20.76	14.08
CDY32273	Canola	nucleus	20.59	13.03

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078I1N6	UniProt:A0A078I1N6	EnsemblPlants:CDY44780	ProteinID:CDY44780
ProteinID:CDY44780.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00080781001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EE622C	SEG:seg	:	:	:

Description

BnaC02g01070DBnaC02g01070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1N6]

Coordinates

chrLK032601:+:71347..74595

Molecular Weight (calculated)

64490.7 Da

IEP (calculated)

10.129

GRAVY (calculated)

-0.256

Length

578 amino acids

Sequence
(BLAST)

001: MPCHLFVRKL HGVLTKQCGP TFSLTYYPLK SLINGYGKSL KLLSQLLFVS MNSDDSGNNR ASKRGREGKL AVDDSEPPVK KTASTKATET TRIEHVETSD
101: SYLSNTRFDQ FPLSPLSLKA LEDAGFKTMT VVQEATLPII LKGKDVLAKA KTGTGKTVAY LLPSIEAVIK SPPPASTDKK KPSIIVLVVC PTRELACQAA
201: AEAKTLLKYH SSIGVDVVIG GKKLRAEQRR MQKHPCRILV ATPGRLIDHI DNTPGFARRL RGVKVLVLDE ADHLLDMGFR RDVERIISAV PKKRQTFLFS
301: ATVPEEVRQI CHVALKQDHE FVNCVQEGSD ETHQKVTQMY MIASLDRHFS LIYMLLKRHI ADNVDYKVII FCTTAMVTRM VADLLGQLSL NVREIHSRKP
401: QGYRTRVSDE FRKSKSIILV TSDVSSRGLD YPDVSLVIQM GLPSDRKQYI HRLGRTGRED KEGEGVLLLA PWEEYFLSSV KDLPITKASL PQTDPEAVKK
501: VKKALRQVDM KNKEAAYQAW LGYYTSQKKI ARDTTRLVEL ANEFSRSMGL SIPPAIPVNV LDKMGLKNVP GLRVVPGS

Best Arabidopsis Sequence Match ( AT5G08620.1 )
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Arabidopsis Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.