CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004584.1-P	Field mustard	nucleus	87.79	98.37
CDY23886	Canola	plasma membrane	94.04	92.3
AT2G40700.1	Thale cress	nucleus	78.49	88.52
KRH12590	Soybean	nucleus	54.8	69.43
VIT_11s0016g00630.t01	Wine grape	nucleus	59.01	67.67
KRH37539	Soybean	nucleus	52.47	66.98
PGSC0003DMT400006153	Potato	nucleus	50.29	64.79
Solyc07g042270.2.1	Tomato	nucleus	55.81	64.32
PGSC0003DMT400006154	Potato	nucleus	55.38	63.82
GSMUA_Achr7P18160_001	Banana	nucleus	51.02	60.1
EES18259	Sorghum	nucleus	52.03	59.67
Os05t0110500-02	Rice	nucleus	51.02	59.39
Zm00001d010225_P001	Maize	plasma membrane	43.6	58.37
TraesCS1A01G030500.1	Wheat	nucleus	51.45	57.84
TraesCS1B01G037600.1	Wheat	nucleus	51.74	57.79
TraesCS1D01G031400.1	Wheat	nucleus	51.31	57.68
HORVU1Hr1G004510.5	Barley	plastid	51.45	53.64
CDX92251	Canola	nucleus	26.6	32.16
CDY36514	Canola	nucleus	27.03	31.9
CDX99342	Canola	nucleus	26.31	31.87
CDY18530	Canola	nucleus	26.31	31.87
CDX82336	Canola	nucleus	26.45	31.76
CDX95512	Canola	nucleus	26.31	31.75
CDX75974	Canola	nucleus	26.6	31.44
CDY08740	Canola	nucleus	26.89	31.14
CDY42845	Canola	cytosol	20.2	30.96
CDY47007	Canola	cytosol	20.06	30.73
CDX81759	Canola	cytosol	19.91	28.07
CDY52844	Canola	cytosol	19.77	27.93
CDY40740	Canola	cytosol	19.77	25.14
CDY04952	Canola	nucleus	20.64	23.91
CDY14112	Canola	cytosol	20.64	23.91
CDY44780	Canola	mitochondrion	20.06	23.88
CDX70149	Canola	nucleus	20.06	23.08
CDY17287	Canola	nucleus	21.8	22.94
CDX69933	Canola	cytosol	4.36	22.06
CDX96202	Canola	cytosol	8.87	21.94
CDX84428	Canola	mitochondrion	20.93	20.37
CDY41525	Canola	mitochondrion	20.93	20.25
CDY40519	Canola	nucleus	21.37	19.39
CDY50846	Canola	nucleus	21.37	17.52
CDY53643	Canola	nucleus	21.37	17.42
CDX79187	Canola	cytosol	20.49	16.63
CDX68066	Canola	cytosol	20.49	16.55
CDY49890	Canola	mitochondrion	18.46	16.28
CDY45370	Canola	mitochondrion	18.31	16.11
CDY52719	Canola	nucleus, plastid	19.04	15.8
CDY32273	Canola	nucleus	20.93	15.77
CDY34979	Canola	nucleus, plastid	19.04	15.75
CDY21554	Canola	mitochondrion	20.64	10.45
CDX69935	Canola	mitochondrion	20.64	10.3

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CVC2	EnsemblPlants:CDX79974	ProteinID:CDX79974	ProteinID:CDX79974.1
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00132837001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0004EE7C8B	SEG:seg	:

Description

BnaA05g01820D

Coordinates

chrLK031819:-:1125277..1128589

Molecular Weight (calculated)

77267.3 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.401

Length

688 amino acids

Sequence
(BLAST)

001: MVERTQQPAR ETKQEAKDVN KSKSGLFASC SFSSLGLDPK LSDQLKERMG FEAPTHVQAQ SIPVILSGRD VLVNAATGTG KTIAYLAPII HHLQAYSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFEHK NLRWVIFDEA DCILEMGYGK
201: ETEQIIKLLG SRQYEEGDDD DVVVPKGAQK QTLLLSATLN EKVNHLAKLS LDDPVMIGLD NSKTQQKQLP IESPASPDSD EDEMVIHVNK SANPSSEDYG
301: IPSQLVQKYV KVPCGARLVA LLSVLKNLFE REASQKVVVF FSTRDAVDFH HSLLSEFQWP PKSETQEEEE ASKQLFLKCK TFRLHGSMEQ EDRRSAFANF
401: KAEKQALLLS TDVAARGLDF PKVRCIIQYD CPGEATEYVH RVGRTARIGE KGEALLFLQP VEIDYLKDLK KHGATLAEYP LLKVLDKFPL LGNMPRIKKV
501: ISLESHPWVI SLQRALEFFT YAEPKMKNLA KNAFVSWVRG YAAHKGELKS IFVVKKLHLG HVAKSFALKE QPSLVGKSHH KETMKRKRDE RQRGQHPKKR
601: KKMSGGNSRM YACLSRVHYI PDEVQLMRWA PSLGAAGLAA LPRPEDEDYN SMVESKIMES DLKCVPVLVA FEAAEAKDGA EEEEARGA

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.