Factsheet for GSMUA_Achr7P18160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00630.t01	Wine grape	nucleus	66.78	65.0
KRH12590	Soybean	nucleus	59.93	64.46
Os05t0110500-02	Rice	nucleus	64.38	63.62
KRH37539	Soybean	nucleus	58.39	63.27
PGSC0003DMT400006153	Potato	nucleus	57.36	62.73
EES18259	Sorghum	nucleus	64.38	62.67
TraesCS1D01G031400.1	Wheat	nucleus	64.38	61.44
Solyc07g042270.2.1	Tomato	nucleus	62.5	61.14
PGSC0003DMT400006154	Potato	nucleus	62.5	61.14
TraesCS1A01G030500.1	Wheat	nucleus	64.04	61.11
TraesCS1B01G037600.1	Wheat	nucleus	63.87	60.55
Zm00001d010225_P001	Maize	plasma membrane	53.08	60.31
Bra004584.1-P	Field mustard	nucleus	59.76	56.84
AT2G40700.1	Thale cress	nucleus	59.25	56.72
HORVU1Hr1G004510.5	Barley	plastid	64.04	56.67
CDX79974	Canola	nucleus	60.1	51.02
CDY23886	Canola	plasma membrane	60.62	50.5
GSMUA_Achr10P...	Banana	cytosol	29.97	33.85
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	29.28	30.65
GSMUA_Achr3P14380_001	Banana	cytosol	20.38	26.62
GSMUA_Achr8P01870_001	Banana	cytosol	24.83	22.27
GSMUA_Achr5P09910_001	Banana	nucleus	17.47	21.52
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	24.32	19.35
GSMUA_Achr8P34380_001	Banana	cytosol	23.46	18.84
GSMUA_Achr8P12970_001	Banana	nucleus	24.49	18.67
GSMUA_Achr8P04210_001	Banana	cytosol	22.77	17.97
GSMUA_Achr10P...	Banana	mitochondrion	22.6	17.44
GSMUA_Achr9P14580_001	Banana	nucleus	22.77	16.2
GSMUA_Achr5P10150_001	Banana	nucleus	20.55	15.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G18160_001	EnsemblPlants:GSMUA_Achr7P18160_001	EnsemblPlants:GSMUA_Achr7T18160_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TIK3	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002965249	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 17 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18160_001]

Coordinates

chr7:+:20963905..20968613

Molecular Weight (calculated)

65754.1 Da

IEP (calculated)

9.922

GRAVY (calculated)

-0.223

Length

584 amino acids

Sequence
(BLAST)

001: MKEPKEKKKG AEVAAGAGGE GLFASCSFSD LGLHPFLCQH LRDKMGFEFP TQIQAQAIPV VVSGRHVLVN AATGTGKTIV YLAPIVHLLQ MYEPRVQRSD
101: GTFALVLVPT RELCMQVHGV LQKLLHCFHW IVPGYIMGGE NRAKEKARLR KGISILVATP GRLLDHLKNT SSFNYTNLRW IVFDEADRIL ELGFGKAVEE
201: ILDFLGSRQA DHVCKQHMNT KSAKFSRQNL LLSATLNDKV NHLANISLEN PIMIGMDCKK DSTVPLKLSL GDAVGGDLEG VGALSSQLTE NYNLPSQLVQ
301: RYVKVSCGSR LVVLLSILRF AFERETSQKV NSGLELFLTI FYLPDAMICF KANQEQKIVG CRSFHLHGNM EHEDRRKAFH EFTSEKSALL LCTDVAARGL
401: DFPKVRCIIQ YDSPGEASEY VHRVGRTARL GEKGEALLFL QPVEIDYLHD LQHHGVSLKE YPLQKIIDSF SVHGQKHHNK KLISLETHPW VLFLQKTLET
501: FISTESKLKK LANDAFCSWV RAYTAHRGEL KRIFMVKKLH LGHVARSFGL KDQPSLVGRS HQIESKKRKR DQKKAISFKR RKSS

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.