Factsheet for GSMUA_Achr8P04210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0618500-01	Rice	nucleus	52.16	72.01
Os01t0618400-01	Rice	nucleus, plasma membrane	55.0	68.52
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	49.19	67.66
Zm00001d044208_P001	Maize	plastid	53.38	67.41
TraesCS3B01G252700.2	Wheat	nucleus	43.38	67.3
EES01082	Sorghum	mitochondrion, plastid	53.38	67.18
TraesCS3A01G222500.1	Wheat	nucleus, plastid	48.78	67.1
TraesCS3A01G222700.1	Wheat	mitochondrion	53.24	67.01
TraesCS3D01G230300.1	Wheat	nucleus	48.65	66.91
EES03287	Sorghum	cytosol	50.68	66.84
TraesCS3B01G252600.1	Wheat	plastid	52.84	66.84
TraesCS3D01G230400.2	Wheat	mitochondrion	52.97	66.67
Zm00001d044203_P001	Maize	plasma membrane	49.32	65.18
CDY40740	Canola	cytosol	45.68	62.48
Bra028652.1-P	Field mustard	nucleus	45.41	62.11
Bra009356.1-P	Field mustard	cytosol	47.03	62.03
AT5G08620.1	Thale cress	nucleus	46.76	61.46
CDY44780	Canola	mitochondrion	46.76	59.86
GSMUA_Achr3P14380_001	Banana	cytosol	35.27	58.39
KRH47920	Soybean	nucleus	54.32	57.18
VIT_15s0046g01010.t01	Wine grape	plastid	57.57	55.4
AT5G63630.2	Thale cress	mitochondrion, plastid	52.97	54.75
CDX84428	Canola	mitochondrion	51.62	54.03
CDY41525	Canola	mitochondrion	51.49	53.59
GSMUA_Achr10P...	Banana	mitochondrion	54.59	53.37
Bra009355.1-P	Field mustard	mitochondrion, plastid	53.38	51.84
Bra038650.1-P	Field mustard	mitochondrion	51.35	51.14
KRH06491	Soybean	nucleus	55.14	50.62
AT5G08610.1	Thale cress	mitochondrion, plastid	53.65	46.71
Solyc01g095740.2.1	Tomato	nucleus	54.59	46.44
PGSC0003DMT400000611	Potato	mitochondrion	52.7	44.78
GSMUA_Achr10P...	Banana	cytosol	20.27	29.01
CDY21554	Canola	mitochondrion	52.57	28.62
CDX69935	Canola	mitochondrion	52.7	28.28
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	20.0	26.52
GSMUA_Achr5P09910_001	Banana	nucleus	15.14	23.63
GSMUA_Achr7P18160_001	Banana	nucleus	17.97	22.77
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	20.95	21.12
GSMUA_Achr8P01870_001	Banana	cytosol	18.38	20.89
GSMUA_Achr8P12970_001	Banana	nucleus	19.59	18.93
GSMUA_Achr8P34380_001	Banana	cytosol	17.7	18.02
GSMUA_Achr5P10150_001	Banana	nucleus	17.43	16.75
GSMUA_Achr9P14580_001	Banana	nucleus	16.89	15.23

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G04210_001
EnsemblPlants:GSMUA_Achr8P04210_001	EnsemblPlants:GSMUA_Achr8T04210_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0TMH4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295A5D3	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 31 [Source:GMGC_GENE;Acc:GSMUA_Achr8G04210_001]

Coordinates

chr8:-:2844769..2849528

Molecular Weight (calculated)

82170.4 Da

IEP (calculated)

9.985

GRAVY (calculated)

-0.412

Length

740 amino acids

Sequence
(BLAST)

001: MDPTDDRPDN IRWLIPFGDS LSVRRSSLKP LIPILPPCGR SQTMPGQLLP LRPLDYPGPR GASVLGRAFP FKLKYLALSA RPRRLLSLGH DSAAGHRRTG
101: LLVESSGAPG KRKALVEEDT QVGGWSDDWE SEELERDGRR SGRPKSRTRV RGDGGNTKPL VRDAASSKRS RDSDSKFLQV IGNGKKNQNP SLDESLLRRS
201: RGLLNKKRSF SHLDEVDEEE ERNVECDSIN DAPNNGGKIK QGMSGNASGA AASPEIGRLS SIAEDESYLS QTRFENCSLS PLSLKGIEAA GYVMMTQVQE
301: ATLPLILEGK DVLAKAKTGT GKTVAFLLPA IEVISRLPPL SHDKKRPSIN VLVICPTREL ALQAAAEANK LLKYHTSIGV QVVIGGTRLT QEQRHMQANP
401: CQILIATPGR LKDHIENTTG FVSRLNGVKV LVLDEADRLL DMGFRNDIEK IIATVPKQRQ TLLFSATVPN EVRQICHIAL KKDYKFISTV DEGSEETHSQ
501: VKQMHLIAPL DKHFSILYCI LKEHILEDAD YKVIVFCTTA MVTKLVADLL TKLHLNVREI HSRKPQTYRT RVSEEFRQSK GLILVSSDVS ARGVDYPDVT
601: LVIQVGLPAD REQYIHRLGR TGRKGKEGKG LLILAPWEKL FLASVQDLPI TEAPVPSMDR STMKEVEQAL QLVEMKNKES AYQAWLGYYN SNKKIGRDKL
701: KLVELAREFS QSLGLRDPPA IPKLILRKMG LHNVPGLRSK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.