Factsheet for PGSC0003DMT400000611

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095740.2.1	Tomato	nucleus	93.92	94.02
Bra009356.1-P	Field mustard	cytosol	43.17	67.02
Bra028652.1-P	Field mustard	nucleus	41.1	66.17
CDY40740	Canola	cytosol	40.76	65.62
Os01t0618500-01	Rice	nucleus	40.18	65.3
AT5G08620.1	Thale cress	nucleus	42.02	65.01
KRH47920	Soybean	nucleus	52.47	65.01
EES03287	Sorghum	cytosol	40.53	62.92
VIT_15s0046g01010.t01	Wine grape	plastid	55.22	62.55
CDY44780	Canola	mitochondrion	41.45	62.46
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	38.58	62.45
TraesCS3B01G252700.2	Wheat	nucleus	33.75	61.64
AT5G63630.2	Thale cress	mitochondrion, plastid	50.29	61.17
TraesCS3A01G222500.1	Wheat	nucleus, plastid	37.77	61.15
Zm00001d044203_P001	Maize	plasma membrane	39.27	61.07
TraesCS3D01G230300.1	Wheat	nucleus	37.66	60.97
CDX84428	Canola	mitochondrion	49.48	60.96
Os01t0618400-01	Rice	nucleus, plasma membrane	41.45	60.77
CDY41525	Canola	mitochondrion	49.48	60.62
Zm00001d044208_P001	Maize	plastid	40.76	60.58
OQU76491	Sorghum	nucleus	45.58	60.52
TraesCS3D01G230400.2	Wheat	mitochondrion	40.76	60.37
TraesCS3B01G252600.1	Wheat	plastid	40.53	60.34
EES01082	Sorghum	mitochondrion, plastid	40.53	60.03
TraesCS3A01G222700.1	Wheat	mitochondrion	40.53	60.03
Bra009355.1-P	Field mustard	mitochondrion, plastid	50.86	58.14
Bra038650.1-P	Field mustard	mitochondrion	49.48	58.01
KRH06491	Soybean	nucleus	53.39	57.69
GSMUA_Achr10P...	Banana	mitochondrion	49.25	56.67
AT5G08610.1	Thale cress	mitochondrion, plastid	52.35	53.65
GSMUA_Achr8P04210_001	Banana	cytosol	44.78	52.7
Zm00001d046097_P001	Maize	mitochondrion	49.94	46.47
Os06t0526600-01	Rice	mitochondrion	48.91	46.15
TraesCS7D01G328100.1	Wheat	mitochondrion	48.68	44.21
TraesCS7B01G232200.1	Wheat	mitochondrion	48.91	43.96
TraesCS7A01G350700.1	Wheat	mitochondrion	48.56	43.7
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	35.36	38.21
CDY21554	Canola	mitochondrion	50.06	32.08
CDX69935	Canola	mitochondrion	49.94	31.54
PGSC0003DMT400063252	Potato	nucleus	19.4	29.86
PGSC0003DMT400029241	Potato	cytosol	15.84	28.34
PGSC0003DMT400006153	Potato	nucleus	15.04	24.53
PGSC0003DMT400006154	Potato	nucleus	16.65	24.29
PGSC0003DMT400057606	Potato	nucleus	15.73	21.99
PGSC0003DMT400057202	Potato	nucleus	18.14	20.93
PGSC0003DMT400025551	Potato	nucleus	16.76	19.6
PGSC0003DMT400003801	Potato	nucleus	16.53	18.07

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0ZH14	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG401000216
PGSC:PGSC0003DMG401000216	EnsemblPlants:PGSC0003DMT400000611	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00029625A2
SEG:seg	:	:	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG401000216]

Coordinates

chr1:-:73330966..73338418

Molecular Weight (calculated)

95498.8 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.730

Length

871 amino acids

Sequence
(BLAST)

001: MKCNSTLKPK TIPVFSRMFP HKLKYRSIGF PILAAQEQEL RRFSSRSGRP RPGSGADVRV SKSLIEDEAE LSDWVSGLRS DSSFTKTQVY SESDDNEGDR
101: ERSRGKFGNR RNGGEDRGEK RRRDDDFSGP GRRGGGPMQS NSRNGGRFGS ELSGGRGAGR GGMQSNSRNG GRFGSELSGG RGAGRGGMQS NSRNGGRFGN
201: ERGSRNEGGR GDGGRDRMGS SSRGGRFGSD IRSGSEGRRS GGQDRMESFS KGGRFGSDMG RESEGRRSGG QDRMESFPRK GGRFGSEMAS SSDNRGKSRV
301: GSGYGRDMAA QGGSGRLGRK EGAGMGRGSS MLLDEDDTDN EDEEEENGYK GFQDLIDSEE ESEESDEDNE VEDEKMVSLE KEDSPRTSSP SSHGKSDSHL
401: TETRFDQFPL SPSSLKGVKD AGYKTMTVVQ EATLPVILKG KDVLAKAKTG TGKTVAFLLP SIEVVVKSPP NTRDQKRPPV LVLVICPTRE LATQAAAEAN
501: TLLKYHPSIG VQVVIGGTRL ALEQKRMQAN PCQILVATPG RLRDHVENTA GFATRLMGVK VLVLDEADHL LDMGFRKEIE RIISAIPKQR QTLLFSATVP
601: PEVRQICHIA LKRDHEFINT VEEGSEETHA QVQQMHLVSP LESHFSLLYA LLKEHIADDV NYKVLVFCTT AMVTKLVAEL LGELNLNVRE IHSRKPQSYR
701: TRVSDEFRQS TGLILVSSDV SARGVDYPDV TLVVQIGVPA DRQQYIHRLG RTGRKGKEGQ GILLLAPWEE FFLSTIKDLP VSKAPVPLLD PEAKKKVERA
801: LAHIDMKTKE SAYQAWLGYY NSNRAIGKDK YRLVELANEF SRTMGLDNPP AISKLVLGKM GLKNIPGLRS K

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.