Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g064520.2.1 | Tomato | nucleus | 96.95 | 97.08 |
| KRH73730 | Soybean | nucleus | 65.96 | 66.76 |
| KRH14417 | Soybean | cytosol, nucleus | 44.9 | 64.2 |
| GSMUA_Achr6P00390_001 | Banana | cytosol, mitochondrion | 62.38 | 64.17 |
| CDY17287 | Canola | nucleus | 53.64 | 61.93 |
| Bra002946.1-P | Field mustard | nucleus | 60.26 | 61.16 |
| AT5G54910.1 | Thale cress | nucleus | 58.41 | 59.68 |
| EER99450 | Sorghum | nucleus | 53.51 | 54.23 |
| Zm00001d006497_P002 | Maize | nucleus | 52.19 | 52.67 |
| TraesCS2A01G222000.1 | Wheat | mitochondrion, nucleus | 51.92 | 51.65 |
| TraesCS2D01G228000.1 | Wheat | nucleus | 51.79 | 51.18 |
| TraesCS2B01G247500.1 | Wheat | nucleus | 51.52 | 50.98 |
| Os07t0517000-01 | Rice | nucleus | 34.57 | 49.81 |
| PGSC0003DMT400063252 | Potato | nucleus | 26.36 | 35.16 |
| PGSC0003DMT400029241 | Potato | cytosol | 17.88 | 27.72 |
| PGSC0003DMT400006153 | Potato | nucleus | 18.01 | 25.47 |
| PGSC0003DMT400057606 | Potato | nucleus | 20.53 | 24.88 |
| PGSC0003DMT400006154 | Potato | nucleus | 19.6 | 24.79 |
| PGSC0003DMT400025551 | Potato | nucleus | 19.47 | 19.73 |
| PGSC0003DMT400000611 | Potato | mitochondrion | 20.93 | 18.14 |
| PGSC0003DMT400010896 | Potato | cytosol, nucleus, plastid | 18.68 | 17.49 |
| PGSC0003DMT400003801 | Potato | nucleus | 17.88 | 16.94 |
Protein Annotations
| EntrezGene:102583283 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4217 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M1C0M4 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF13959 | EnsemblPlantsGene:PGSC0003DMG400022219 | PGSC:PGSC0003DMG400022219 | EnsemblPlants:PGSC0003DMT400057202 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF54 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SMART:SM01178 | SUPFAM:SSF52540 | UniParc:UPI0002954FCB | RefSeq:XP_006346221.1 |
| SEG:seg | : | : | : | : | : |
Description
Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400022219]
Coordinates
chr7:-:54805582..54810425
Molecular Weight (calculated)
85083.7 Da
IEP (calculated)
8.994
GRAVY (calculated)
-0.541
Length
755 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKHAPKSRK VKIQNRLSEV HEIELLEEWI ESGKPESGSN PLSLEPLPHK APVGRLPDGS FSRYAGCDRF SQLPVSKKTK DGLTQCKYKT MTDIQRASLP
101: HSLCGRDILG AAKTGSGKTL AFVIPVLEKL YKARWGPEDG VGCIIMSPTR ELAGQLFEVL KSVGKHHGFS AGLLIGGRKD VDAEKEHVNG LNILVCTPGR
201: LLQHMDETPN FDCSQLQVLV LDEADRILDV GFKRDVNAII SQLPKHRQTL LFSATQTKSV QDLARLSLKD PEYLGVHEES DTATPNRLQQ TAMLVPLDKK
301: FDMLWSFIKA HLNSRILVFL SSCKQVKFVF ETFKKLRPGI PLKCLHGRMK QDRRMGIYSQ FCEQRSVLFS TDVASRGLDF NKAVDWVVQV DCPEDCAAYI
401: HRVGRTARYL SGGRSVLFVM PSEMKMLEKL EEKKIPLRVI KANEKRIQSV SDLLASLLVK YPDLQHLAQR AFVTYLKSIH KQRDKEIFDV TKLPIDEFSA
501: SLGLPMTPKI RFLKQKLKGK TVSEALSLIP ENTSNDNLLE FPIKEPEFPI KDPDAGKSDV EEVDDDILLA KETQEGGENI NSKGDDMLAT RVTKKKKLKI
601: NVHRPVGTRV VFDEEGNTLP PLARLAASSS GADSVQLNKE KVNQRYAELR KNLKVADKED KDLDRKRRKE KRIKEKIKNK RGREEEEEED EELSGSDMEI
701: PRGRVDKKTK IYFDSDDEDG ERRGDMAKKE GIAADAISLA EQEELALKLL NSMHS
101: HSLCGRDILG AAKTGSGKTL AFVIPVLEKL YKARWGPEDG VGCIIMSPTR ELAGQLFEVL KSVGKHHGFS AGLLIGGRKD VDAEKEHVNG LNILVCTPGR
201: LLQHMDETPN FDCSQLQVLV LDEADRILDV GFKRDVNAII SQLPKHRQTL LFSATQTKSV QDLARLSLKD PEYLGVHEES DTATPNRLQQ TAMLVPLDKK
301: FDMLWSFIKA HLNSRILVFL SSCKQVKFVF ETFKKLRPGI PLKCLHGRMK QDRRMGIYSQ FCEQRSVLFS TDVASRGLDF NKAVDWVVQV DCPEDCAAYI
401: HRVGRTARYL SGGRSVLFVM PSEMKMLEKL EEKKIPLRVI KANEKRIQSV SDLLASLLVK YPDLQHLAQR AFVTYLKSIH KQRDKEIFDV TKLPIDEFSA
501: SLGLPMTPKI RFLKQKLKGK TVSEALSLIP ENTSNDNLLE FPIKEPEFPI KDPDAGKSDV EEVDDDILLA KETQEGGENI NSKGDDMLAT RVTKKKKLKI
601: NVHRPVGTRV VFDEEGNTLP PLARLAASSS GADSVQLNKE KVNQRYAELR KNLKVADKED KDLDRKRRKE KRIKEKIKNK RGREEEEEED EELSGSDMEI
701: PRGRVDKKTK IYFDSDDEDG ERRGDMAKKE GIAADAISLA EQEELALKLL NSMHS
001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
Arabidopsis Description
RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.