Factsheet for PGSC0003DMT400010896

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	95.78	95.9
GSMUA_Achr3P14380_001	Banana	cytosol	40.69	73.38
VIT_02s0025g03950.t01	Wine grape	mitochondrion	63.15	67.51
KRH41139	Soybean	nucleus	57.44	65.49
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	12.03	60.62
Bra027808.1-P	Field mustard	mitochondrion	56.7	58.51
CDY45370	Canola	mitochondrion	56.58	58.31
CDY49890	Canola	mitochondrion	56.2	58.08
AT1G63250.1	Thale cress	mitochondrion	56.2	56.77
Os02t0826100-01	Rice	cytosol	55.58	55.24
EES07789	Sorghum	mitochondrion	55.96	54.8
KRH59841	Soybean	nucleus	35.73	54.44
Zm00001d018516_P002	Maize	mitochondrion	55.21	54.4
AT2G07750.1	Thale cress	plastid	55.83	53.25
TraesCS6D01G392700.1	Wheat	cytosol	53.85	51.54
TraesCS6B01G455000.1	Wheat	cytosol	53.6	51.25
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	47.15	50.0
TraesCS6A01G409100.1	Wheat	cytosol	53.47	48.65
PGSC0003DMT400000611	Potato	mitochondrion	38.21	35.36
PGSC0003DMT400063252	Potato	nucleus	19.73	28.09
PGSC0003DMT400029241	Potato	cytosol	14.14	23.41
PGSC0003DMT400006153	Potato	nucleus	15.51	23.41
PGSC0003DMT400057606	Potato	nucleus	17.12	22.15
PGSC0003DMT400006154	Potato	nucleus	16.38	22.11
PGSC0003DMT400025551	Potato	nucleus	18.24	19.73
KRH54980	Soybean	nucleus	4.22	19.1
PGSC0003DMT400057202	Potato	nucleus	17.49	18.68
PGSC0003DMT400003801	Potato	nucleus	17.37	17.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0ZYQ5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400004265	PGSC:PGSC0003DMG400004265	EnsemblPlants:PGSC0003DMT400010896	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00029602A0	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 48 [Source:PGSC_GENE;Acc:PGSC0003DMG400004265]

Coordinates

chr12:+:54172559..54178914

Molecular Weight (calculated)

92510.9 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.639

Length

806 amino acids

Sequence
(BLAST)

001: MGGGPRTFPG GLNKWQWKRL HEKKARDKEN RLLDQEKQLY QARIRSQIRA KLTSSGEQSN LSNEQQPNYS PVSPQDHIRG LADRFMKEGA EDLWNEDDGP
101: VNIPQINQQS QGISESIDLR KLRDTKFSDV PRSYSFQQAR HFCTNVRDVI AEICRTRNPA CSDSWSRQNK FLMFGWRLGN TENRNVNNLN GFLNFRCYSV
201: DRMNGNRLRK LDFTRNESSE SEDKSRSVGL VVKGDERKTK WPRFRPKAEE STDEDDDEDT EVDEDEEERR RRGSVKMMSS AALGKYDMKT KKRVPLKFVE
301: DEDDLSLHVA AIRKEVKGRS MQKIETEEDE KETILSSKRF DEYDVSPLTV KALTAAGYVQ MTKVQEATLS ACLEGKDALV KARTGTGKSA AFLLPAIETV
401: LKASRKKSAQ RVPPIDVLIL CPTRELASQI AAEANVLLKY HEGIGVQTLV GGTRFKEDQK RLECDPCQII VATPGRLLDH IENKSGFSTR IMGLKMLILD
501: EADHLLDLGF RKDIEKLVDC LPRRRQSLLF SATVPKEVRR ISQLVLKREY DYVDTVGLGL ETNPKVKQFY LVAPHEQHFQ LVHHLLASHI SEVPDYKVIV
601: FCTTAMMTSL MFSLFREMKM NVREIHSRKP QLYRTRISDE FKETKRVILI SSDVSARGMN YPDVTLVIQV GLPVDREQYI HRLGRTGREG KEGEGILLLA
701: PWEQYFLDDI KDLPMENWPV PHLDPRVKVK MEEAMEKMDT SVKEAAYHAW LGYYNSVREI GRDKTTLVEL ANHFSESIGL QKPPSLFRRT ALKMGLKDVP
801: GIRIRK

Best Arabidopsis Sequence Match ( AT2G07750.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASS PVGLRRLFCS NASRFSFLSP PARRQAEPST NLFHSGLSKR ITSERSLWNR IFSRNMGGGP RTFPGGLNKW QWKRMHEKKA
101: REKENKLLDQ EKQLYEARIR TEIRAKMWGH PDSGEKTAKL KQSHGPMSPK EHIKTLADRF MKAGADDLWN DNDGPVKKFD QGSRSCSDSI DSTPIDVRRL
201: VSATCDSMGK HRVLDSSRRG FSSMSRFKRN ESSCDEGDDV DAKKLDTLSP FSPKFSGTKE KVKSSTSVVG VIRNKGLFGR RKFRKNDSST EEDSDEEGNE
301: GKMIGWMDLR KTGSSASLGN HDIKLTKRVN RNVTDEELYP PLDINRVRED LSKKQSVDNV MEEKQEPHDS IYSAKRFDES CISPLTLKAL SASGIVKMTR
401: VQDATLSECL DGKDALVKAK TGTGKSMAFL LPAIETVLKA MNSGKGVHKV APIFVLILCP TRELASQIAA EGKALLKNHD GIGVQTLIGG TRFRLDQQRL
501: ESEPCQILIA TPGRLLDHIE NKSGLTSRLM ALKLFIVDEA DLLLDLGFKR DVEKIIDCLP RQRQSLLFSA TIPKEVRRVS QLVLKRDHSY IDTIGLGCVE
601: THDKVKQSCI VAPHESHFHL VPHLLKEHIN NMPDYKIIVF CSTGMVTSLM YTLLREMKLN VREIHARKPQ LHRTCVSDEF KESNRLILVT SDVSARGMNY
701: PDVTLVIQVG IPSDREQYIH RLGRTGREGK GGKGLLLIAP WERYFLDELK DLPLEPIPAP DLDSRVKHQV DQSMAKIDTS IKEAAYHAWL GYYNSVRETG
801: RDKTTLAELA NRFCHSIGLE KPPALFRRTA VKMGLKGISG IPIRK

Arabidopsis Description

RH33Putative DEAD-box ATP-dependent RNA helicase 33 [Source:UniProtKB/Swiss-Prot;Acc:O80792]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.