Factsheet for GSMUA_Achr3P14380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	20.36	56.88
KRH41139	Soybean	nucleus	73.83	46.68
VIT_02s0025g03950.t01	Wine grape	mitochondrion	76.29	45.23
HORVU6Hr1G093300.7	Barley	cytosol, nucleus	72.71	42.76
Os02t0826100-01	Rice	cytosol	75.39	41.55
CDY49890	Canola	mitochondrion	71.36	40.9
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	73.6	40.87
EES07789	Sorghum	mitochondrion	75.17	40.83
Bra027808.1-P	Field mustard	mitochondrion	71.14	40.72
Zm00001d018516_P002	Maize	mitochondrion	74.5	40.71
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	73.38	40.69
CDY45370	Canola	mitochondrion	71.14	40.66
AT1G63250.1	Thale cress	mitochondrion	71.14	39.85
TraesCS6D01G392700.1	Wheat	cytosol	73.15	38.84
TraesCS6B01G455000.1	Wheat	cytosol	73.15	38.79
AT2G07750.1	Thale cress	plastid	70.92	37.51
TraesCS6A01G409100.1	Wheat	cytosol	73.15	36.91
GSMUA_Achr10P...	Banana	mitochondrion	61.3	36.2
GSMUA_Achr8P04210_001	Banana	cytosol	58.39	35.27
KRH59841	Soybean	nucleus	39.37	33.27
GSMUA_Achr10P...	Banana	cytosol	29.98	25.92
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	30.43	24.37
GSMUA_Achr7P18160_001	Banana	nucleus	26.62	20.38
GSMUA_Achr5P09910_001	Banana	nucleus	20.36	19.2
GSMUA_Achr8P01870_001	Banana	cytosol	27.07	18.59
KRH54980	Soybean	nucleus	7.16	17.98
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	28.64	17.44
GSMUA_Achr8P12970_001	Banana	nucleus	27.52	16.06
GSMUA_Achr8P34380_001	Banana	cytosol	25.95	15.96
GSMUA_Achr9P14580_001	Banana	nucleus	25.5	13.89
GSMUA_Achr5P10150_001	Banana	nucleus	23.49	13.64

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr3G14380_001	EnsemblPlants:GSMUA_Achr3P14380_001	EnsemblPlants:GSMUA_Achr3T14380_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M0SEK5	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF324	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295E295	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 48 [Source:GMGC_GENE;Acc:GSMUA_Achr3G14380_001]

Coordinates

chr3:+:13514235..13518692

Molecular Weight (calculated)

50556.1 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.143

Length

447 amino acids

Sequence
(BLAST)

001: MTVVQEATLP VCLDGKDALV KAKTGTGKSA AFLLPAIETV IKATQSSINR RLPQIHVLII CPTRELAIQV AAEANVLLKH HVGIGVQTFT GGTRFKMDQK
101: RLESNPCQII VATPGRLLDH IENKSGFSVR LMGLKMLILD EADHLLDLGY RKDIEKIVDS VPRQRQSLLF SATFPREVCR ISQLVLKRDH IFVDTVGLGC
201: VETHAKVLQA YLIAPHQLHY HLVYNLLKEH MQQELDYKVI VFCTTAMGAA FMYVLLRDLK MNVREMHSRK PQLYRTRISD EFRESKCIIL VTSDVSSRGM
301: NYPDVTLVIQ VGIPPDREQY IHRLGRTGRQ GKDGKGILLL APWEEYFMDQ IKDLPIKKYQ LLDLDSDTKQ KVEDSIGRVD PSIKEAAYHA WLGYYNSIRE
401: VGRDKTTLAD LANQFCHSIG LEKPPALFRR TALKMGLKGI PGIRVHK

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.