Factsheet for GSMUA_Achr9P14580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009070.2.1	Tomato	nucleus	68.94	72.1
KRH64859	Soybean	nucleus	67.97	71.81
KRH09570	Soybean	nucleus	67.72	71.56
Zm00001d032317_P001	Maize	nucleus	37.76	63.39
Os08t0416100-01	Rice	nucleus	65.29	62.98
Zm00001d050315_P001	Maize	nucleus	64.43	62.98
OQU80427	Sorghum	nucleus	65.04	62.6
AT1G77030.1	Thale cress	nucleus	63.95	62.13
TraesCS4B01G341100.1	Wheat	plastid	63.7	61.24
TraesCS5A01G510500.1	Wheat	nucleus	63.09	60.8
TraesCS4D01G337100.1	Wheat	nucleus	62.97	60.75
CDX79187	Canola	cytosol	61.88	59.91
Bra003691.1-P	Field mustard	cytosol	61.75	59.51
CDX68066	Canola	cytosol	61.63	59.39
HORVU4Hr1G083970.6	Barley	nucleus	51.89	48.8
GSMUA_Achr10P...	Banana	cytosol	16.2	25.73
GSMUA_Achr3P14380_001	Banana	cytosol	13.89	25.5
GSMUA_Achr5P09910_001	Banana	nucleus	13.52	23.42
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	15.83	23.3
GSMUA_Achr7P18160_001	Banana	nucleus	16.2	22.77
GSMUA_Achr8P12970_001	Banana	nucleus	20.22	21.67
GSMUA_Achr8P01870_001	Banana	cytosol	16.81	21.2
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	17.42	19.48
GSMUA_Achr8P34380_001	Banana	cytosol	17.05	19.26
GSMUA_Achr5P10150_001	Banana	nucleus	16.81	17.92
GSMUA_Achr10P...	Banana	mitochondrion	15.83	17.17
GSMUA_Achr8P04210_001	Banana	cytosol	15.23	16.89

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr9G14580_001	EnsemblPlants:GSMUA_Achr9P14580_001	EnsemblPlants:GSMUA_Achr9T14580_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0U0B6	InterPro:P-loop_NTPase	PFAM:PD024971	PFAM:PF00270
PFAM:PF00271	PFAM:PF08147	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01123	SUPFAM:SSF52540
UniParc:UPI0002949BC7	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 29 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14580_001]

Coordinates

chr9:-:9518397..9531929

Molecular Weight (calculated)

92388.9 Da

IEP (calculated)

10.160

GRAVY (calculated)

-0.450

Length

821 amino acids

Sequence
(BLAST)

001: MAAMVGVSSK AELKRRMKEI KKAKSGGFES LGLCSEVYRG VKRKGYRVPT PIQRKTMPLI LSGADVVAMA RTGSGKTAAF LVPMLQKLRQ HVPQAGVRAL
101: ILSPTRDLAL QTLKFTKELG RFTDLRTSLL VGGDNMEDQF EELAQNPDII IATPGRLMHH LSEVEGMSLR TVEYVVFDEA DSLFGMGFAE QLHKILSQLS
201: DMRQTLLFSA TMPSALAEFA KAGLRDPQLV RLDLDTKISP DLKLMFFTLR HEEKLAALLY LVREHISSDQ QTLIFVSTKH HVEFLNILFR EEGIEPSISY
301: GDMDQDARKI HISKFRARKT MLLIVTDVAA RGLDIPLLDN VVNWDFPPKP KLFVHRVGRA ARAGRTGTAY SFVTTEDMPY LLDLHLFLSK PLRPAPSEEE
401: ILSDMEAVYS RIDQALANGE TIYGRFPQPT LDLVSERVRE VTDGNTELIS LQNVCANAFR LYSKGKPLPS RESIRRIKDL PREGLHPVFR SVLGSNELAA
501: LAFSERLKAF RPKQTILEAE GEAAKSKNAQ GSNQCLEVMR KKRAVHEEVI KLARQKRSVD DASKGMEAAK ELSVDWMEKD ICCAKRKVSN FKDDEYYISS
601: VPTNQHLEAG LSVKNDEGFG SSRLDSAVLD LVGDDSTGLQ KQKSQYHWDK RSKKYIKLNS GDRVTVSGKI KNESGAKVKA DKTGLYKKWK ERSHQRISLG
701: GMEKDNLQEG GLAERGNKQH YKGKRKRWSV PNANVPSELK DPEQVRKGRQ QKANKIAHLK TKSSKGKRFS KQKRGKRERL LSVIVMFLLY PETNIDITCA
801: TIDILLDEAW QTIHLTTGKL D

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.