Factsheet for TraesCS4D01G337100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G510500.1	Wheat	nucleus	98.82	98.71
TraesCS4B01G341100.1	Wheat	plastid	98.35	98.01
Zm00001d032317_P001	Maize	nucleus	46.06	80.16
Os08t0416100-01	Rice	nucleus	77.79	77.79
Zm00001d050315_P001	Maize	nucleus	75.44	76.43
OQU80427	Sorghum	nucleus	75.91	75.73
HORVU4Hr1G083970.6	Barley	nucleus	77.67	75.72
Solyc10g009070.2.1	Tomato	nucleus	59.22	64.2
GSMUA_Achr9P14580_001	Banana	nucleus	60.75	62.97
KRH64859	Soybean	nucleus	57.46	62.93
KRH09570	Soybean	nucleus	57.23	62.68
Bra003691.1-P	Field mustard	cytosol	55.58	55.52
CDX68066	Canola	cytosol	55.58	55.52
AT1G77030.1	Thale cress	nucleus	54.99	55.38
CDX79187	Canola	cytosol	54.99	55.19
TraesCS2D01G131200.1	Wheat	nucleus	15.75	29.26
TraesCS6D01G103400.1	Wheat	nucleus	14.92	28.6
TraesCS2D01G160100.1	Wheat	cytosol	15.51	25.88
TraesCS6D01G292400.1	Wheat	nucleus	16.22	24.95
TraesCS5D01G050600.1	Wheat	nucleus	16.33	24.87
TraesCS1D01G031400.1	Wheat	nucleus	17.39	24.18
TraesCS5D01G127000.1	Wheat	nucleus	16.45	24.14
TraesCS3D01G230300.1	Wheat	nucleus	14.45	22.86
TraesCS7D01G309800.1	Wheat	nucleus	7.99	21.79
TraesCS3D01G230400.2	Wheat	mitochondrion	14.57	21.09
TraesCS5D01G385400.1	Wheat	nucleus	19.27	21.08
TraesCS3D01G100800.1	Wheat	plastid	15.75	20.84
TraesCS2D01G228000.1	Wheat	nucleus	17.63	19.63
TraesCS2D01G363700.1	Wheat	nucleus	15.98	16.27
TraesCS6D01G392700.1	Wheat	cytosol	13.87	14.01
TraesCS7D01G328100.1	Wheat	mitochondrion	14.81	13.14

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PD024971	PFAM:PF00270	PFAM:PF00271	PFAM:PF08147	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01123	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G337100	EnsemblPlants:TraesCS4D01G337100.1	TIGR:cd00079	TIGR:cd00268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:494810738..494819600

Molecular Weight (calculated)

94638.6 Da

IEP (calculated)

10.575

GRAVY (calculated)

-0.647

Length

851 amino acids

Sequence
(BLAST)

001: MAPSGKSSPS TDGAASTADR KPWRRPQMKS KAAGKKKAAQ AAHNKKPKSG GFESMGLCEE VYRGVRHKGY RVPTPIQRKA MPLILAGLDV AAMARTGSGK
101: TAAFLVPMLQ RLRHRDPGAG IRALILSPTR DLATQTLKFT HQLGKFSDLK TGLIVGGGSM ESQFEVLADN PDIIIATPGR FEHILSMVDD LSLRSVEYVV
201: FDEADSLFSL GFAEQLHKIL HKLSDTRQTL LFSATMPKAL AEFAKAGLRD PQVIRLDLDK KISPDLKLAF FTLRQEEKLA ALLYLVRERI SSEEQTMIFV
301: STKYHVEFLN ILFREEGLEA SLSYGAMDQE ARTIHISRFR ARKTMLLIVT DVAARGLDIP LLDNVVNWDF PAKPKLFIHR VGRVARQGRT GTAFTFVTSE
401: DMPFLLDLHL FLSKPLRPAP TEEELLKDMD GMNLKINQSL ADGETIYGRF PQTVLDLCSD GVKEVISGCT DLIALEKPCA NAFRLYLKTR AMPSKESVRR
501: AKDLPREGLH PIFRDVLRPD EISAIAFSER LKSFRPKQTI LEAEGEAARS RSSKGSNQWL DVMKKKREVH EGIINLVHEQ SGDLATKEED TENISNWEKK
601: EVCGKKRKSQ SFRDEDHYIS SVPQNQHSEA GLSVKGNEGF VQDRLDAAVL DLVDDETSGM QAQKTRYHWM KNKFVKLNNG DRVTSTGKIK TESSAKIKAS
701: KDIYKKWQQK SHRAIGSGGK DGAEGGISTP AGYQRGNRRY PAAGRGRSSI PNADVPSEIR NPQQMRKGRQ EKAMQNLRRN EKSARDSKSP GKFQKNRRPN
801: GSGRDDKFQD SRSQKSRRPD GKGKGGGKGN AKGFGKGKGK GKGNPKGRGT R

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.