CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003691.1-P	Field mustard	cytosol	99.29	98.83
CDX68066	Canola	cytosol	99.17	98.71
AT1G77030.1	Thale cress	nucleus	84.91	85.21
KRH64859	Soybean	nucleus	63.92	69.76
KRH09570	Soybean	nucleus	63.56	69.37
Solyc10g009070.2.1	Tomato	nucleus	62.85	67.9
GSMUA_Achr9P14580_001	Banana	nucleus	59.91	61.88
Zm00001d032317_P001	Maize	nucleus	33.61	58.28
Zm00001d050315_P001	Maize	nucleus	56.84	57.38
OQU80427	Sorghum	nucleus	56.72	56.39
Os08t0416100-01	Rice	nucleus	55.31	55.11
TraesCS4B01G341100.1	Wheat	plastid	55.42	55.04
TraesCS4D01G337100.1	Wheat	nucleus	55.19	54.99
TraesCS5A01G510500.1	Wheat	nucleus	55.07	54.81
HORVU4Hr1G083970.6	Barley	nucleus	45.64	44.33
CDY42845	Canola	cytosol	15.57	29.4
CDY47007	Canola	cytosol	15.57	29.4
CDY52844	Canola	cytosol	16.51	28.75
CDX81759	Canola	cytosol	16.51	28.69
CDY18530	Canola	nucleus	16.75	25.0
CDX99342	Canola	nucleus	16.75	25.0
CDX92251	Canola	nucleus	16.75	24.96
CDX95512	Canola	nucleus	16.63	24.74
CDX82336	Canola	nucleus	16.63	24.61
CDX96202	Canola	cytosol	8.02	24.46
CDX75974	Canola	nucleus	16.75	24.4
CDY36514	Canola	nucleus	16.16	23.5
CDY08740	Canola	nucleus	16.27	23.23
CDY14112	Canola	cytosol	16.04	22.9
CDY04952	Canola	nucleus	16.04	22.9
CDX70149	Canola	nucleus	16.04	22.74
CDY17287	Canola	nucleus	17.1	22.17
CDY40740	Canola	cytosol	14.03	22.0
CDY40519	Canola	nucleus	19.22	21.5
CDY44780	Canola	mitochondrion	14.15	20.76
CDX79974	Canola	nucleus	16.63	20.49
CDY23886	Canola	plasma membrane	16.63	20.11
CDY50846	Canola	nucleus	19.1	19.31
CDY53643	Canola	nucleus	19.1	19.19
CDY41525	Canola	mitochondrion	14.98	17.86
CDX84428	Canola	mitochondrion	14.86	17.82
CDY32273	Canola	nucleus	18.75	17.42
CDY52719	Canola	nucleus, plastid	16.86	17.25
CDY34979	Canola	nucleus, plastid	16.86	17.19
CDX69933	Canola	cytosol	2.59	16.18
CDY45370	Canola	mitochondrion	13.56	14.71
CDY49890	Canola	mitochondrion	13.44	14.62
CDY21554	Canola	mitochondrion	15.21	9.49
CDX69935	Canola	mitochondrion	15.33	9.43

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CR39	EnsemblPlants:CDX79187	ProteinID:CDX79187	ProteinID:CDX79187.1
ncoils:Coil	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00131758001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PD024971	PFAM:PF00270	PFAM:PF00271	PFAM:PF08147	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01123	SUPFAM:SSF52540	UniParc:UPI0004EE57DB	SEG:seg	:	:

Description

BnaC06g21160D

Coordinates

chrLK031817:-:89159..92926

Molecular Weight (calculated)

93481.2 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.584

Length

848 amino acids

Sequence
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVY NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFAKE LGKFTDLRVT LLVGGDSMQD QFEELTKSPD VIIATPGRLM HLLEEVDDMS LRTVEYVVFD EADSLFGMGF AEQLHQILAK
201: LGENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT LRPEEKYAAL IYLVREHISS NEQTIIFVST KHHVEFVNSL FKLENIVPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGS AISFVTPEDI PYLLDLHLFL SKPIRPAPTE
401: DEVLKNMEEV MNRTSEAIES GVTVYGRFPQ KTIDLIFNKI QEMIDSSAEL DSLERTSRKA FRLYTTTKPA PSKESIRRAK ALPREGLHPM FKSIIEGGEL
501: EAMAFFQKIK NFRPKQTILE AEGENAKARN VKGLQWVDVM KRKREVHEEI INKRLEQSQK TSSSNNHLEM EVDEPITTSI EDKIAGSKLS GKKRTAQQTF
601: KDEEFYISSI PVNHHSEAGL SVRGNEGFGS NRLDAAVLDL VADDGQGMKQ QKTNYHWDKK SKKFIKLNNG DRVTASGKIK TESGAKVRAN KTGAIYKKWK
701: DSTHKKAFSR EDGDGDDTPS MSGRGGRRGK RWSASVPNAH VRSEIKDLEQ VRKERQEKAN KLSYLHSKRG GGRGGARGGR GGGRGSGRDF DGGSGRDFAG
801: RSSRGGRGGG SSRGGRGGGF GGGRGGGSGG GRGGSSRGGG GGKRGRGR

Best Arabidopsis Sequence Match ( AT1G77030.1 )
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Arabidopsis Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.